BLASTX nr result
ID: Coptis25_contig00028605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028605
(321 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002298874.1| predicted protein [Populus trichocarpa] gi|2... 120 1e-25
ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
emb|CBI18516.3| unnamed protein product [Vitis vinifera] 110 1e-22
emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera] 110 1e-22
ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 110 2e-22
>ref|XP_002298874.1| predicted protein [Populus trichocarpa] gi|222846132|gb|EEE83679.1|
predicted protein [Populus trichocarpa]
Length = 948
Score = 120 bits (301), Expect = 1e-25
Identities = 54/106 (50%), Positives = 78/106 (73%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
+ LF EMV+ N+LPD++T +I+L+G +KG+ + A+L F K L + L PN+V+YT L D
Sbjct: 415 VALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFD 474
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLGQMAKV 319
GLFK GQ ASY+Y+EM K + PD + +NA++DGYSR+G+M KV
Sbjct: 475 GLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKV 520
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/99 (31%), Positives = 50/99 (50%)
Frame = +2
Query: 8 LFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLIDGL 187
L D M I D T ++L+ K + LL K + K + PN+ Y LI+GL
Sbjct: 32 LIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLKK-MRKRMIAPNEFTYNTLINGL 90
Query: 188 FKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLG 304
K+ ++ A+ ++ EML +L P+ V N ++DG+ G
Sbjct: 91 MKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCG 129
>ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 110 bits (275), Expect = 1e-22
Identities = 52/105 (49%), Positives = 73/105 (69%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
+ LFD+MV++N+LPD+YT S LL+G +KG+ ++A+ LF + + L PN V+YTCL+D
Sbjct: 1424 VALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVD 1483
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLGQMAK 316
GL K G K A Y ++EM++K PD V NAI+D SR GQM K
Sbjct: 1484 GLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 1528
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/101 (31%), Positives = 53/101 (52%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
I L D M+ I D T ++ + + A LL K + K + PN+V Y LI+
Sbjct: 1039 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKK-MRKEMISPNEVTYNTLIN 1097
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLG 304
G K+G++ A+ ++ EM + DL P+ V NA++ G+ +G
Sbjct: 1098 GFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVG 1138
>emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 110 bits (275), Expect = 1e-22
Identities = 52/105 (49%), Positives = 73/105 (69%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
+ LFD+MV++N+LPD+YT S LL+G +KG+ ++A+ LF + + L PN V+YTCL+D
Sbjct: 556 VALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVD 615
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLGQMAK 316
GL K G K A Y ++EM++K PD V NAI+D SR GQM K
Sbjct: 616 GLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 660
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/101 (31%), Positives = 53/101 (52%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
I L D M+ I D T ++ + + A LL K + K + PN+V Y LI+
Sbjct: 288 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKK-MRKEMISPNEVTYNTLIN 346
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLG 304
G K+G++ A+ ++ EM + DL P+ V NA++ G+ +G
Sbjct: 347 GFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVG 387
>emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 110 bits (275), Expect = 1e-22
Identities = 52/105 (49%), Positives = 73/105 (69%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
+ LFD+MV++N+LPD+YT S LL+G +KG+ ++A+ LF + + L PN V+YTCL+D
Sbjct: 673 VALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVD 732
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLGQMAK 316
GL K G K A Y ++EM++K PD V NAI+D SR GQM K
Sbjct: 733 GLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 777
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/101 (31%), Positives = 53/101 (52%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
I L D M+ I D T ++ + + A LL K + K + PN+V Y LI+
Sbjct: 288 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKK-MRKEMISPNEVTYNTLIN 346
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLG 304
G K+G++ A+ ++ EM + DL P+ V NA++ G+ +G
Sbjct: 347 GFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVG 387
>ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g55840-like [Cucumis sativus]
Length = 1079
Score = 110 bits (274), Expect = 2e-22
Identities = 47/101 (46%), Positives = 74/101 (73%)
Frame = +2
Query: 8 LFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLIDGL 187
LF+EM+++NILPD+YT + +LSG ++G + A + ++++K L N ++YTC IDGL
Sbjct: 617 LFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGL 676
Query: 188 FKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGYSRLGQM 310
FK GQ K A Y+++EM EK L D++ +N+I DGYSR+G++
Sbjct: 677 FKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKV 717
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/97 (27%), Positives = 52/97 (53%)
Frame = +2
Query: 2 IVLFDEMVRSNILPDAYTLSILLSGFFKKGETLSAMLLFSKVLEKSFLHPNQVIYTCLID 181
+VL M I D T ++ + + + L+ K+ K + PN+V Y LI+
Sbjct: 230 LVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNK-MITPNEVSYNTLIN 288
Query: 182 GLFKDGQVKTASYMYQEMLEKDLQPDIVLVNAIMDGY 292
G K+G++ A+ ++ EM+E +L P+++ N +++GY
Sbjct: 289 GFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGY 325