BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028595
         (1012 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              206   6e-51
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   206   6e-51
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,...   186   6e-45
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   172   1e-40
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,...   172   2e-40

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  206 bits (525), Expect = 6e-51
 Identities = 109/186 (58%), Positives = 134/186 (72%)
 Frame = +2

Query: 455  SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTRMKRRKLEMIMC 634
            +RSA LTP EEAEF L LKE A L+AA+ R  ET +   TS+QW  +  +KR  L+ ++C
Sbjct: 18   ARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLC 77

Query: 635  KAXXXXXXXXXXXXXFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 814
                            VVSIA  YQGKGLSL+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 78   NGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 137

Query: 815  AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 994
             YWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA   L+RRL R PT DEIA+ I + 
Sbjct: 138  VYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVN 197

Query: 995  VSSITL 1012
            VS++ L
Sbjct: 198  VSTVRL 203


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  206 bits (525), Expect = 6e-51
 Identities = 109/186 (58%), Positives = 134/186 (72%)
 Frame = +2

Query: 455  SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTRMKRRKLEMIMC 634
            +RSA LTP EEAEF L LKE A L+AA+ R  ET +   TS+QW  +  +KR  L+ ++C
Sbjct: 125  ARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLC 184

Query: 635  KAXXXXXXXXXXXXXFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 814
                            VVSIA  YQGKGLSL+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 185  NGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 244

Query: 815  AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 994
             YWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA   L+RRL R PT DEIA+ I + 
Sbjct: 245  VYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVN 304

Query: 995  VSSITL 1012
            VS++ L
Sbjct: 305  VSTVRL 310


>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 436

 Score =  186 bits (473), Expect = 6e-45
 Identities = 123/327 (37%), Positives = 171/327 (52%), Gaps = 3/327 (0%)
 Frame = +2

Query: 41   STMTNLCAPTNNSPTLPSVHIYSVPKMLSIRTLQPVLPSSSSGAHKFGLSLVSEDSLTIV 220
            +T ++LC+    SPTLPS+ + S+P + +    QP  P       K G +++S D+LT+ 
Sbjct: 2    ATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFST-KLGPNIISNDTLTLP 60

Query: 221  XXXXXXXXXXXXXXXXXXMILHCEENKFECENDEIME-SCDMRRVSAGT--WXXXXXXXX 391
                              +        +  +N E ME SC    V  GT  W        
Sbjct: 61   PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC----VGDGTVAWKKKRRKRR 116

Query: 392  XXFPCNELNSVGKILKFPLRKSRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAF 571
                     +   +   PLR      L+P EEAE  L LKE   L+  KTR  ET +   
Sbjct: 117  KEVGVKAEENWIALSSGPLRPGY---LSPKEEAELCLCLKEAVLLENVKTRIMETQEHEP 173

Query: 572  TSSQWDASTRMKRRKLEMIMCKAXXXXXXXXXXXXXFVVSIANGYQGKGLSLEDLIQEGS 751
            T+ Q   +   K   ++ I+C+A              V+SIA  YQGKGLSL+DL QEG+
Sbjct: 174  TNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGN 233

Query: 752  IGLLRGAKKFEPNKGFKLSTYAYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKE 931
            IGLL+GA++FEPN+G KLSTYAYWWI+QAIIRA+  KSR++RL G M +MV +I E N  
Sbjct: 234  IGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNH 293

Query: 932  LTRRLGRNPTNDEIADSIGIKVSSITL 1012
            L  +L R PTN E+A+S+ + +S+I L
Sbjct: 294  LGIKLSRPPTNKEVAESLKVHLSTIRL 320


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
            gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
            polymerase sigma factor sigD, chloroplastic; Short=Sigma
            factor D; Short=Sigma-D; AltName: Full=RNA polymerase
            sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
            Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
            factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
            RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
            gi|9758039|dbj|BAB08700.1| sigma-like factor [Arabidopsis
            thaliana] gi|332004550|gb|AED91933.1| sigma factor 4
            [Arabidopsis thaliana]
          Length = 419

 Score =  172 bits (436), Expect = 1e-40
 Identities = 89/186 (47%), Positives = 124/186 (66%)
 Frame = +2

Query: 455  SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTRMKRRKLEMIMC 634
            SRS  L+  EE +  L+LKEGA+L+   T   E    +   +   +    K+R    I+C
Sbjct: 118  SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLA---SGRGKKKRSANEILC 174

Query: 635  KAXXXXXXXXXXXXXFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 814
            +               VVSIA GYQGKGL+L+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 175  RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 234

Query: 815  AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 994
             YWWIKQAI+RAIA+KSR+++L GSM E+  K+ EA+  LTR+L R P+ +EIA+ + + 
Sbjct: 235  VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 294

Query: 995  VSSITL 1012
            VS++ L
Sbjct: 295  VSAVRL 300


>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 341

 Score =  172 bits (435), Expect = 2e-40
 Identities = 91/185 (49%), Positives = 120/185 (64%)
 Frame = +2

Query: 458  RSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTRMKRRKLEMIMCK 637
            R   L+P EEAE  L LKE   L+  KTR  ET +   T+ Q   +   K   ++ I+C+
Sbjct: 41   RPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCR 100

Query: 638  AXXXXXXXXXXXXXFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTYA 817
            A              V+SIA  YQGKGLSL+DL QEG+IGLL+GA++FEPN+G KLSTYA
Sbjct: 101  ARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYA 160

Query: 818  YWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIKV 997
            YWWI+QAIIRA+  KSR++RL G M +MV +I E N  L  +L R PTN E+A+S+ + +
Sbjct: 161  YWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHL 220

Query: 998  SSITL 1012
            S+I L
Sbjct: 221  STIRL 225