BLASTX nr result
ID: Coptis25_contig00028576
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028576
(848 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containi... 379 e-103
emb|CBI33142.3| unnamed protein product [Vitis vinifera] 379 e-103
emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera] 379 e-103
ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group] g... 324 1e-86
ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containi... 323 2e-86
>ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 379 bits (972), Expect = e-103
Identities = 180/281 (64%), Positives = 224/281 (79%)
Frame = +3
Query: 3 WNAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQKGHVERARSLFDRMPNKNA 182
WNAMISG VR R+EEA+RLFEEMP RNVISYTAM+DGYA+ G +E+AR+LF+ MP KN
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNV 202
Query: 183 VSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRNK 362
VSWTVMISGYVENGKFDEA+ LF MP+KN+VA+TAMITG+CKEG + A+ LF++I +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262
Query: 363 DIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQIH 542
D+ SWNAMI GY QNG+GEEAL + S ML+ GM+PDHST +EGR+ H
Sbjct: 263 DLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 322
Query: 543 VHVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYD 722
V V+K G+ES +S+CNALITMY K GSI D+E+ F+Q+D PD+VSWN +IA +A HG YD
Sbjct: 323 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 382
Query: 723 RALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKESMDWF 845
RAL+SF EM N ++PDGITFL++L+ACGHAGKV ES++WF
Sbjct: 383 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWF 423
Score = 145 bits (367), Expect = 9e-33
Identities = 84/273 (30%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Frame = +3
Query: 81 RNVISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 260
++V ++ + A+ G++ AR LFD MP+++ VSW +I+GY +NG FDE+K LFG+M
Sbjct: 45 QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104
Query: 261 PEKNVVAITAMITGFCKEGNMESARRLFEEIRNKDIISWNAMIAGYVQNGNGEEALSMTS 440
P KNVV+ +MI G ++ ++ A + F+ + ++ SWNAMI+G V+ EEA +
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164
Query: 441 GMLE------TGMKPDHSTFXXXXXXXXXXXXXKEGRQIHVHVIKEGF------------ 566
M T M ++ + + V+ G+
Sbjct: 165 EMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 224
Query: 567 -----ESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYDRAL 731
+ N+ A+IT Y K G A+++F Q+ DL SWN +I GYA +G + AL
Sbjct: 225 FEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284
Query: 732 SSFDEMGLNGLKPDGITFLNILTACGHAGKVKE 830
+M G++PD T +++LTAC ++E
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQE 317
>emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 379 bits (972), Expect = e-103
Identities = 180/281 (64%), Positives = 224/281 (79%)
Frame = +3
Query: 3 WNAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQKGHVERARSLFDRMPNKNA 182
WNAMISG VR R+EEA+RLFEEMP RNVISYTAM+DGYA+ G +E+AR+LF+ MP KN
Sbjct: 71 WNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNV 130
Query: 183 VSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRNK 362
VSWTVMISGYVENGKFDEA+ LF MP+KN+VA+TAMITG+CKEG + A+ LF++I +
Sbjct: 131 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 190
Query: 363 DIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQIH 542
D+ SWNAMI GY QNG+GEEAL + S ML+ GM+PDHST +EGR+ H
Sbjct: 191 DLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 250
Query: 543 VHVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYD 722
V V+K G+ES +S+CNALITMY K GSI D+E+ F+Q+D PD+VSWN +IA +A HG YD
Sbjct: 251 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 310
Query: 723 RALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKESMDWF 845
RAL+SF EM N ++PDGITFL++L+ACGHAGKV ES++WF
Sbjct: 311 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWF 351
>emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 379 bits (972), Expect = e-103
Identities = 180/281 (64%), Positives = 224/281 (79%)
Frame = +3
Query: 3 WNAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQKGHVERARSLFDRMPNKNA 182
WNAMISG VR R+EEA+RLFEEMP RNVISYTAM+DGYA+ G +E+AR+LF+ MP KN
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNV 202
Query: 183 VSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRNK 362
VSWTVMISGYVENGKFDEA+ LF MP+KN+VA+TAMITG+CKEG + A+ LF++I +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262
Query: 363 DIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQIH 542
D+ SWNAMI GY QNG+GEEAL + S ML+ GM+PDHST +EGR+ H
Sbjct: 263 DLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 322
Query: 543 VHVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYD 722
V V+K G+ES +S+CNALITMY K GSI D+E+ F+Q+D PD+VSWN +IA +A HG YD
Sbjct: 323 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 382
Query: 723 RALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKESMDWF 845
RAL+SF EM N ++PDGITFL++L+ACGHAGKV ES++WF
Sbjct: 383 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWF 423
Score = 144 bits (364), Expect = 2e-32
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Frame = +3
Query: 81 RNVISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 260
++V ++ + A+ G++ AR +FD MP+++ VSW +I+GY +NG FDE+K LFG+M
Sbjct: 45 QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104
Query: 261 PEKNVVAITAMITGFCKEGNMESARRLFEEIRNKDIISWNAMIAGYVQNGNGEEALSMTS 440
P KNVV+ +MI G ++ ++ A + F+ + ++ SWNAMI+G V+ EEA +
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164
Query: 441 GMLE------TGMKPDHSTFXXXXXXXXXXXXXKEGRQIHVHVIKEGF------------ 566
M T M ++ + + V+ G+
Sbjct: 165 EMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 224
Query: 567 -----ESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYDRAL 731
+ N+ A+IT Y K G A+++F Q+ DL SWN +I GYA +G + AL
Sbjct: 225 FEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284
Query: 732 SSFDEMGLNGLKPDGITFLNILTACGHAGKVKE 830
+M G++PD T +++LTAC ++E
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQE 317
>ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza
sativa Japonica Group] gi|215715342|dbj|BAG95093.1|
unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein
OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 324 bits (831), Expect = 1e-86
Identities = 156/281 (55%), Positives = 204/281 (72%)
Frame = +3
Query: 3 WNAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQKGHVERARSLFDRMPNKNA 182
WNAM++G VR G +E+A LF++MPERNV+SYT M+DG A+ G V AR LFD MP +N
Sbjct: 113 WNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNL 172
Query: 183 VSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRNK 362
VSW MISGYV+N +EA+ LF MPEKNVVA TAMITG+CKEG++++ARRLF+ IR K
Sbjct: 173 VSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAK 232
Query: 363 DIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQIH 542
D+ISWNA+I+GYV NG GEEA + ML G+KPD +T ++GR H
Sbjct: 233 DVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTH 292
Query: 543 VHVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYD 722
VIK ES++S+CNAL+TMY+K G++ ++E+VF + S D+VSWNTIIA YA HG Y
Sbjct: 293 AVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQ 352
Query: 723 RALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKESMDWF 845
+ ++ F EM L GL P+ ITFL++L+ACGHAG+V ES+ F
Sbjct: 353 KVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLF 393
Score = 120 bits (302), Expect = 3e-25
Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 25/262 (9%)
Frame = +3
Query: 120 AQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGK-FDEAKALFGMMPEKNVVAITAMI 296
A+ G V AR +FD MP ++AVSW +++ G+ A++LF MP +NV++ ++I
Sbjct: 27 ARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISWNSII 86
Query: 297 TGFCKEGNMESARRLFEEIRNKDIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHS 476
G G++ +A F +++ SWNAM+AG V+ G+ E+A S+ M E + ++
Sbjct: 87 AGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPERNV-VSYT 145
Query: 477 TFXXXXXXXXXXXXXKE-----------------GRQIHVHVIKEGF-------ESNLSV 584
T +E + ++++E E N+
Sbjct: 146 TMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVA 205
Query: 585 CNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYDRALSSFDEMGLNGL 764
C A+IT Y K G + +A +F + + D++SWN II+GY H+G + A + M G+
Sbjct: 206 CTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGI 265
Query: 765 KPDGITFLNILTACGHAGKVKE 830
KPD T + +LTAC +++
Sbjct: 266 KPDQATLIALLTACSSLALLRQ 287
>ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 323 bits (829), Expect = 2e-86
Identities = 162/282 (57%), Positives = 210/282 (74%), Gaps = 1/282 (0%)
Frame = +3
Query: 3 WNAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQ-KGHVERARSLFDRMPNKN 179
+NA+ISG R GR+++A RLFE MP NV+SYTAM+DGYA+ +G + RAR+LF+ MP +N
Sbjct: 125 YNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRN 184
Query: 180 AVSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRN 359
+VSW VMI+G VENG +EA +F MP+KN VA TAMITGFCKEG ME AR LF+EIR
Sbjct: 185 SVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRC 244
Query: 360 KDIISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQI 539
+D++SWN ++ GY QNG GEEAL++ S M+ TGM+PD TF +EG +
Sbjct: 245 RDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKA 304
Query: 540 HVHVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHY 719
H +IK GF+S+LSVCNALIT+++K G I D+E+VF Q+ PDLVSWNTIIA +A HG Y
Sbjct: 305 HALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLY 364
Query: 720 DRALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKESMDWF 845
D+A S FD+M ++PDGITFL++L+AC AGKV ESM+ F
Sbjct: 365 DKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLF 406
Score = 155 bits (391), Expect = 1e-35
Identities = 83/275 (30%), Positives = 149/275 (54%)
Frame = +3
Query: 6 NAMISGFVRSGRIEEATRLFEEMPERNVISYTAMMDGYAQKGHVERARSLFDRMPNKNAV 185
N I R+G+++ A +LF+EM ++V+++ +M+ Y Q G ++R+++LF MP +N V
Sbjct: 33 NLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVV 92
Query: 186 SWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNMESARRLFEEIRNKD 365
SW +I+ V+N +A PEKN + A+I+G + G M+ A+RLFE + +
Sbjct: 93 SWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPN 152
Query: 366 IISWNAMIAGYVQNGNGEEALSMTSGMLETGMKPDHSTFXXXXXXXXXXXXXKEGRQIHV 545
++S+ AM+ GY + G + + E + + ++ +E ++ V
Sbjct: 153 VVSYTAMVDGYARVEGG---IGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFV 209
Query: 546 HVIKEGFESNLSVCNALITMYNKGGSIPDAEVVFQQVDSPDLVSWNTIIAGYAHHGHYDR 725
+ + N A+IT + K G + DA +FQ++ DLVSWN I+ GYA +G +
Sbjct: 210 RMP----QKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEE 265
Query: 726 ALSSFDEMGLNGLKPDGITFLNILTACGHAGKVKE 830
AL+ F +M G++PD +TF+++ AC ++E
Sbjct: 266 ALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEE 300