BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028556
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   129   2e-28
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t...   120   1e-25
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   118   4e-25
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   118   4e-25

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/116 (56%), Positives = 92/116 (79%)
 Frame = -2

Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251
           VS++ L+ +R+R PIS+DQ+  T   CMT+Q IIPGP+E  P+ M+K++++K+EV+R L 
Sbjct: 198 VSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 256

Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNID 83
           TL  REA I+RLYFG+NGET  S EEIG ++ LSRERVRQI+ IAL+KLR+++ +D
Sbjct: 257 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 312


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/116 (56%), Positives = 92/116 (79%)
 Frame = -2

Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251
           VS++ L+ +R+R PIS+DQ+  T   CMT+Q IIPGP+E  P+ M+K++++K+EV+R L 
Sbjct: 305 VSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 363

Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNID 83
           TL  REA I+RLYFG+NGET  S EEIG ++ LSRERVRQI+ IAL+KLR+++ +D
Sbjct: 364 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 419


>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 185

 Score =  120 bits (301), Expect = 1e-25
 Identities = 62/118 (52%), Positives = 91/118 (77%)
 Frame = -2

Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251
           VS++ L+ +R+R PISLD+S    +  + ++ IIPGP E+ PE M++++++K+ V ++L 
Sbjct: 64  VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 122

Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77
           TLD RE  I+RLYFGLNGET  S EEIG +L LSRER+RQIHGIAL+KLR++  +D++
Sbjct: 123 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSL 180


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  118 bits (296), Expect = 4e-25
 Identities = 61/118 (51%), Positives = 90/118 (76%)
 Frame = -2

Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251
           VS++ L+ +R+R PISLD+S    +  + ++ IIPGP E+ PE M++++++K+ V ++L 
Sbjct: 146 VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 204

Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77
           TLD RE  I+RLYFGLNGET  S EEIG +L LSRER+RQIHGIAL+KL ++  +D++
Sbjct: 205 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 262


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  118 bits (296), Expect = 4e-25
 Identities = 61/118 (51%), Positives = 90/118 (76%)
 Frame = -2

Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251
           VS++ L+ +R+R PISLD+S    +  + ++ IIPGP E+ PE M++++++K+ V ++L 
Sbjct: 282 VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 340

Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77
           TLD RE  I+RLYFGLNGET  S EEIG +L LSRER+RQIHGIAL+KL ++  +D++
Sbjct: 341 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 398