BLASTX nr result
ID: Coptis25_contig00028556
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028556 (434 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI24961.3| unnamed protein product [Vitis vinifera] 129 2e-28 ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 129 2e-28 ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t... 120 1e-25 ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca... 118 4e-25 ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca... 118 4e-25 >emb|CBI24961.3| unnamed protein product [Vitis vinifera] Length = 319 Score = 129 bits (324), Expect = 2e-28 Identities = 65/116 (56%), Positives = 92/116 (79%) Frame = -2 Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251 VS++ L+ +R+R PIS+DQ+ T CMT+Q IIPGP+E P+ M+K++++K+EV+R L Sbjct: 198 VSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 256 Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNID 83 TL REA I+RLYFG+NGET S EEIG ++ LSRERVRQI+ IAL+KLR+++ +D Sbjct: 257 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 312 >ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera] Length = 426 Score = 129 bits (324), Expect = 2e-28 Identities = 65/116 (56%), Positives = 92/116 (79%) Frame = -2 Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251 VS++ L+ +R+R PIS+DQ+ T CMT+Q IIPGP+E P+ M+K++++K+EV+R L Sbjct: 305 VSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 363 Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNID 83 TL REA I+RLYFG+NGET S EEIG ++ LSRERVRQI+ IAL+KLR+++ +D Sbjct: 364 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 419 >ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula] gi|355488477|gb|AES69680.1| RNA polymerase sigma factor rpoD [Medicago truncatula] Length = 185 Score = 120 bits (301), Expect = 1e-25 Identities = 62/118 (52%), Positives = 91/118 (77%) Frame = -2 Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251 VS++ L+ +R+R PISLD+S + + ++ IIPGP E+ PE M++++++K+ V ++L Sbjct: 64 VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 122 Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77 TLD RE I+RLYFGLNGET S EEIG +L LSRER+RQIHGIAL+KLR++ +D++ Sbjct: 123 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSL 180 >ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula] gi|355488489|gb|AES69692.1| RNA polymerase sigma factor [Medicago truncatula] Length = 267 Score = 118 bits (296), Expect = 4e-25 Identities = 61/118 (51%), Positives = 90/118 (76%) Frame = -2 Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251 VS++ L+ +R+R PISLD+S + + ++ IIPGP E+ PE M++++++K+ V ++L Sbjct: 146 VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 204 Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77 TLD RE I+RLYFGLNGET S EEIG +L LSRER+RQIHGIAL+KL ++ +D++ Sbjct: 205 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 262 >ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula] gi|355488487|gb|AES69690.1| RNA polymerase sigma factor [Medicago truncatula] Length = 403 Score = 118 bits (296), Expect = 4e-25 Identities = 61/118 (51%), Positives = 90/118 (76%) Frame = -2 Query: 430 VSSITLLQKRNRPPISLDQSHQTLTECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLM 251 VS++ L+ +R+R PISLD+S + + ++ IIPGP E+ PE M++++++K+ V ++L Sbjct: 282 VSTVKLVSERSRQPISLDRSITDQSN-LILKEIIPGPVEMIPEKMVERQLMKQGVVKLLN 340 Query: 250 TLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRSNNIDNI 77 TLD RE I+RLYFGLNGET S EEIG +L LSRER+RQIHGIAL+KL ++ +D++ Sbjct: 341 TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 398