BLASTX nr result
ID: Coptis25_contig00028521
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028521
(741 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] 183 3e-91
gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Ja... 179 2e-88
gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subc... 179 2e-88
gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Ja... 177 2e-88
gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subc... 177 3e-88
>emb|CAA73042.1| polyprotein [Ananas comosus]
Length = 871
Score = 183 bits (464), Expect(2) = 3e-91
Identities = 83/118 (70%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KATIKNKYPLPRIDDLLDQLKGAVIFSQFDLRTGYYQMSVEEQSISLTAFRTRYGLYEFP 181
K TIKNKYPLPRIDDL DQL+G+ ++S+ DL++GY+Q+ ++ + +S TAFRTRYG YEF
Sbjct: 78 KVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFA 137
Query: 182 VMPFGLTNAPAFFMDLMNRVFHPYLDRFVIIFIDDILVYSKSVEEHKEHLRLVLQILR 355
VMPFGLTNAP FMDLMNRVF PYLDRFV++FIDDILVYS+S +H+EHLR+VLQ+LR
Sbjct: 138 VMPFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLR 195
Score = 179 bits (453), Expect(2) = 3e-91
Identities = 78/128 (60%), Positives = 104/128 (81%)
Frame = +1
Query: 358 QQLYAKFSKCHFWVAEVRFLGHVISSKGIAVDPEKVVAVKEWKQPTNATEVRSFLGLAGY 537
++LY K KC FW+ EV FLGH+IS GIAVDP+K+ A+K+W + T+ TE+RSFLGLAGY
Sbjct: 197 KELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIRSFLGLAGY 256
Query: 538 YRRFIEKFSLIAAPMTQLTRKNIKFLWNDDCEQAFQELKQRLTTAPILVIPIRGGKLVVF 717
YRRF+E+F+ ++ P+T+LT K +KF+WND CE++FQELKQRLTTAPIL +P+ G VV+
Sbjct: 257 YRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAGAGYVVY 316
Query: 718 TDASGTGL 741
+DAS GL
Sbjct: 317 SDASLNGL 324
>gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1862
Score = 179 bits (453), Expect(2) = 2e-88
Identities = 83/118 (70%), Positives = 101/118 (85%)
Frame = +2
Query: 2 KATIKNKYPLPRIDDLLDQLKGAVIFSQFDLRTGYYQMSVEEQSISLTAFRTRYGLYEFP 181
+ TIKNKYPLPRIDDL DQLKGA +FS+ DLR+GY+Q+ + E+ I TAF TRYGLYEF
Sbjct: 986 EVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFT 1045
Query: 182 VMPFGLTNAPAFFMDLMNRVFHPYLDRFVIIFIDDILVYSKSVEEHKEHLRLVLQILR 355
VM FGLTNAPAFFM+LMN+VF YLD+FV++FIDDIL+YS+S E+H+ HLRLVL+ LR
Sbjct: 1046 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLEKLR 1103
Score = 174 bits (440), Expect(2) = 2e-88
Identities = 79/127 (62%), Positives = 101/127 (79%)
Frame = +1
Query: 361 QLYAKFSKCHFWVAEVRFLGHVISSKGIAVDPEKVVAVKEWKQPTNATEVRSFLGLAGYY 540
QLYAK SKC FW++EV+FLGHVIS+KG+AVDPE V+AV +WKQP T++RSFLGLAGYY
Sbjct: 1106 QLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVIAVTDWKQPKTVTQIRSFLGLAGYY 1165
Query: 541 RRFIEKFSLIAAPMTQLTRKNIKFLWNDDCEQAFQELKQRLTTAPILVIPIRGGKLVVFT 720
RRFIE FS IA PMTQL +K KF+W+ CE+AFQ LK++L ++P+L++P +V+
Sbjct: 1166 RRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYC 1225
Query: 721 DASGTGL 741
DAS GL
Sbjct: 1226 DASRQGL 1232
>gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 179 bits (453), Expect(2) = 2e-88
Identities = 83/118 (70%), Positives = 101/118 (85%)
Frame = +2
Query: 2 KATIKNKYPLPRIDDLLDQLKGAVIFSQFDLRTGYYQMSVEEQSISLTAFRTRYGLYEFP 181
+ TIKNKYPLPRIDDL DQLKGA +FS+ DLR+GY+Q+ + E+ I TAF TRYGLYEF
Sbjct: 945 EVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFT 1004
Query: 182 VMPFGLTNAPAFFMDLMNRVFHPYLDRFVIIFIDDILVYSKSVEEHKEHLRLVLQILR 355
VM FGLTNAPAFFM+LMN+VF YLD+FV++FIDDIL+YS+S E+H+ HLRLVL+ LR
Sbjct: 1005 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLEKLR 1062
Score = 174 bits (440), Expect(2) = 2e-88
Identities = 79/127 (62%), Positives = 101/127 (79%)
Frame = +1
Query: 361 QLYAKFSKCHFWVAEVRFLGHVISSKGIAVDPEKVVAVKEWKQPTNATEVRSFLGLAGYY 540
QLYAK SKC FW++EV+FLGHVIS+KG+AVDPE V+AV +WKQP T++RSFLGLAGYY
Sbjct: 1065 QLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVIAVTDWKQPKTVTQIRSFLGLAGYY 1124
Query: 541 RRFIEKFSLIAAPMTQLTRKNIKFLWNDDCEQAFQELKQRLTTAPILVIPIRGGKLVVFT 720
RRFIE FS IA PMTQL +K KF+W+ CE+AFQ LK++L ++P+L++P +V+
Sbjct: 1125 RRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYC 1184
Query: 721 DASGTGL 741
DAS GL
Sbjct: 1185 DASRQGL 1191
>gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1449
Score = 177 bits (450), Expect(2) = 2e-88
Identities = 83/118 (70%), Positives = 100/118 (84%)
Frame = +2
Query: 2 KATIKNKYPLPRIDDLLDQLKGAVIFSQFDLRTGYYQMSVEEQSISLTAFRTRYGLYEFP 181
+ TIKNKYPLPRIDDL DQLKGA +FS+ DLR+GY+Q+ + E+ I TAF TRYGL+E
Sbjct: 573 EVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFECT 632
Query: 182 VMPFGLTNAPAFFMDLMNRVFHPYLDRFVIIFIDDILVYSKSVEEHKEHLRLVLQILR 355
VM FGLTNAPAFFM+LMN+VF YLD+FV++FIDDIL+YSK+ EEHKEHLRL L+ LR
Sbjct: 633 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHKEHLRLALEKLR 690
Score = 174 bits (442), Expect(2) = 2e-88
Identities = 82/127 (64%), Positives = 99/127 (77%)
Frame = +1
Query: 361 QLYAKFSKCHFWVAEVRFLGHVISSKGIAVDPEKVVAVKEWKQPTNATEVRSFLGLAGYY 540
QLYAKFSKC FW++EV+FLGHVISS G+AVDP V +V WKQP +EVRSFLGLAGYY
Sbjct: 693 QLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYY 752
Query: 541 RRFIEKFSLIAAPMTQLTRKNIKFLWNDDCEQAFQELKQRLTTAPILVIPIRGGKLVVFT 720
RRFIE FS IA PMT+L +K +K+ W +DCEQ+FQELK+RL TAP+L++P V+
Sbjct: 753 RRFIENFSKIARPMTRLLQKEVKYKWTEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYC 812
Query: 721 DASGTGL 741
DAS GL
Sbjct: 813 DASRLGL 819
>gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 177 bits (449), Expect(2) = 3e-88
Identities = 83/118 (70%), Positives = 100/118 (84%)
Frame = +2
Query: 2 KATIKNKYPLPRIDDLLDQLKGAVIFSQFDLRTGYYQMSVEEQSISLTAFRTRYGLYEFP 181
+ TIKNKYPLPRIDDL DQLKGA +FS+ DLR+GY+Q+ + E+ I TAF TRYGLYEF
Sbjct: 928 EVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFT 987
Query: 182 VMPFGLTNAPAFFMDLMNRVFHPYLDRFVIIFIDDILVYSKSVEEHKEHLRLVLQILR 355
VM FGLTNAPAFFM+LMN+VF YLD+FV++FIDDIL+YS+S E+H+ HLRLVL LR
Sbjct: 988 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLR 1045
Score = 174 bits (441), Expect(2) = 3e-88
Identities = 81/127 (63%), Positives = 100/127 (78%)
Frame = +1
Query: 361 QLYAKFSKCHFWVAEVRFLGHVISSKGIAVDPEKVVAVKEWKQPTNATEVRSFLGLAGYY 540
QLYAK SKC FW++EV+FLGHVIS+KG+AVDPE V AV EWKQP T+VRSFLGLAGYY
Sbjct: 1048 QLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQVRSFLGLAGYY 1107
Query: 541 RRFIEKFSLIAAPMTQLTRKNIKFLWNDDCEQAFQELKQRLTTAPILVIPIRGGKLVVFT 720
RRFIE FS IA PMTQL +K KF+W+ CE+AFQ LK++L ++P+L++P +V+
Sbjct: 1108 RRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYC 1167
Query: 721 DASGTGL 741
DAS GL
Sbjct: 1168 DASRQGL 1174