BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028481
         (656 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249...   167   1e-39
ref|XP_002522264.1| replication factor C / DNA polymerase III ga...   163   3e-38
emb|CBI30725.3| unnamed protein product [Vitis vinifera]              159   3e-37
ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|2...   145   5e-33
ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|2...   141   1e-31

>ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249702 [Vitis vinifera]
          Length = 1161

 Score =  167 bits (424), Expect = 1e-39
 Identities = 89/167 (53%), Positives = 110/167 (65%)
 Frame = +2

Query: 5    LLPSGSLQISKSEIIELEASPREPEGVKCKDXXXXXXXXXXECDWIDESTTSHQQSALGP 184
            LL + SL++ +SEI+E+  SPRE +     D          E  W  E+++SH++S +  
Sbjct: 995  LLNANSLEMGRSEIVEILPSPRELKSNDHVDNNVQSDKTGLESSWAGEASSSHRKSTMAS 1054

Query: 185  SAGKRKNGEQPQSQSLVRSKVSLAHVIQQAEGCTQRNGWSRRKAISIAEKLEQENLRLEP 364
               +RK GEQ  SQSLVRSKVSLAHVIQQAEGC+QR+GW++RKA+SIAEKLEQENLRLEP
Sbjct: 1055 VPERRKFGEQSHSQSLVRSKVSLAHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENLRLEP 1114

Query: 365  RSRSLLCWKASRVTXXXXXXXXXXXXXXXXXXKLFPCVRCLPVKSPR 505
            RSRSLLCWKAS+VT                  KL  C +CL  KSPR
Sbjct: 1115 RSRSLLCWKASKVTRRKLSRFKIRTRRPHSLLKLVSCGKCLSSKSPR 1161


>ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223538517|gb|EEF40122.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 1105

 Score =  163 bits (412), Expect = 3e-38
 Identities = 92/167 (55%), Positives = 110/167 (65%), Gaps = 1/167 (0%)
 Frame = +2

Query: 8    LPSG-SLQISKSEIIELEASPREPEGVKCKDXXXXXXXXXXECDWIDESTTSHQQSALGP 184
            LP+G SL + +SEI+E+ ASPRE +G    D          +     ES  SH+ S++G 
Sbjct: 940  LPAGESLDVGRSEIVEIPASPREIKGSGHADNDAESSKRALQRARAGESV-SHKNSSIGS 998

Query: 185  SAGKRKNGEQPQSQSLVRSKVSLAHVIQQAEGCTQRNGWSRRKAISIAEKLEQENLRLEP 364
             + +RK GE  QS+SLVRSKVSLAHVIQQAEGCTQ+ GWS+RKA+SIAEKLEQENLRLEP
Sbjct: 999  MSERRKLGEPSQSKSLVRSKVSLAHVIQQAEGCTQQTGWSKRKAVSIAEKLEQENLRLEP 1058

Query: 365  RSRSLLCWKASRVTXXXXXXXXXXXXXXXXXXKLFPCVRCLPVKSPR 505
            RSRSLLCWKASRVT                  KL  C +C+  KSPR
Sbjct: 1059 RSRSLLCWKASRVTRRKLSRLKIRTRKPHALLKLVSCGKCISSKSPR 1105


>emb|CBI30725.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  159 bits (403), Expect = 3e-37
 Identities = 87/167 (52%), Positives = 107/167 (64%)
 Frame = +2

Query: 5    LLPSGSLQISKSEIIELEASPREPEGVKCKDXXXXXXXXXXECDWIDESTTSHQQSALGP 184
            LL + SL++ +SEI+E+  SPRE                     W  E+++SH++S +  
Sbjct: 771  LLNANSLEMGRSEIVEILPSPRELNS------------------WAGEASSSHRKSTMAS 812

Query: 185  SAGKRKNGEQPQSQSLVRSKVSLAHVIQQAEGCTQRNGWSRRKAISIAEKLEQENLRLEP 364
               +RK GEQ  SQSLVRSKVSLAHVIQQAEGC+QR+GW++RKA+SIAEKLEQENLRLEP
Sbjct: 813  VPERRKFGEQSHSQSLVRSKVSLAHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENLRLEP 872

Query: 365  RSRSLLCWKASRVTXXXXXXXXXXXXXXXXXXKLFPCVRCLPVKSPR 505
            RSRSLLCWKAS+VT                  KL  C +CL  KSPR
Sbjct: 873  RSRSLLCWKASKVTRRKLSRFKIRTRRPHSLLKLVSCGKCLSSKSPR 919


>ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|222860456|gb|EEE98003.1|
            predicted protein [Populus trichocarpa]
          Length = 1190

 Score =  145 bits (367), Expect = 5e-33
 Identities = 81/157 (51%), Positives = 100/157 (63%)
 Frame = +2

Query: 35   KSEIIELEASPREPEGVKCKDXXXXXXXXXXECDWIDESTTSHQQSALGPSAGKRKNGEQ 214
            +SEI+E+ ASPR+ EG +  +          +  W  ES  S+++ A+G    +R  GE 
Sbjct: 1035 RSEIVEIPASPRKYEGNEPANHNVESSRRGLQRTWAGESV-SNKKPAMGSMVERRILGEP 1093

Query: 215  PQSQSLVRSKVSLAHVIQQAEGCTQRNGWSRRKAISIAEKLEQENLRLEPRSRSLLCWKA 394
             QS+S+VRSKVSLAHVIQQAEGCTQ+  WS+ KA+SIAEKLEQENLRLEPRSRSLLCWKA
Sbjct: 1094 SQSKSIVRSKVSLAHVIQQAEGCTQQAEWSKHKAVSIAEKLEQENLRLEPRSRSLLCWKA 1153

Query: 395  SRVTXXXXXXXXXXXXXXXXXXKLFPCVRCLPVKSPR 505
            +RVT                  KL  C +CL  K PR
Sbjct: 1154 TRVTRRKLSRMKIRTRKPRSLLKLVSCGKCLSSKPPR 1190


>ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|222848688|gb|EEE86235.1|
            predicted protein [Populus trichocarpa]
          Length = 1188

 Score =  141 bits (355), Expect = 1e-31
 Identities = 81/164 (49%), Positives = 101/164 (61%)
 Frame = +2

Query: 14   SGSLQISKSEIIELEASPREPEGVKCKDXXXXXXXXXXECDWIDESTTSHQQSALGPSAG 193
            +G     +SEI+E+  SPR+ EG +  +          +     ES  S+++ A+G    
Sbjct: 1026 TGDYLEGRSEIVEVPTSPRKYEGNEPTNHNVESSRRGLQHTRAGESV-SNKKPAVGSLVE 1084

Query: 194  KRKNGEQPQSQSLVRSKVSLAHVIQQAEGCTQRNGWSRRKAISIAEKLEQENLRLEPRSR 373
            +RK GE  QS+S+VRSKVSLA VIQQAEGCTQ+ GWS+ KA+SIAEKLEQENLRLEPRSR
Sbjct: 1085 RRKLGETSQSKSIVRSKVSLARVIQQAEGCTQQAGWSKHKAVSIAEKLEQENLRLEPRSR 1144

Query: 374  SLLCWKASRVTXXXXXXXXXXXXXXXXXXKLFPCVRCLPVKSPR 505
             LLCWKA+RVT                  KL  C +CL  KSPR
Sbjct: 1145 CLLCWKATRVTRRKLSRLNIRTRKPHSLLKLVSCGKCLSSKSPR 1188