BLASTX nr result
ID: Coptis25_contig00028474
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028474 (709 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFL55357.1| Fanconia anemia complementation group M-like prot... 336 2e-90 ref|NP_174785.1| fanconi anemia group M protein [Arabidopsis tha... 335 5e-90 ref|NP_001185141.1| fanconi anemia group M protein [Arabidopsis ... 335 5e-90 ref|XP_002891189.1| hypothetical protein ARALYDRAFT_473682 [Arab... 335 5e-90 ref|XP_002526811.1| protein with unknown function [Ricinus commu... 331 1e-88 >gb|AFL55357.1| Fanconia anemia complementation group M-like protein [Arabidopsis thaliana] Length = 1344 Score = 336 bits (862), Expect = 2e-90 Identities = 173/220 (78%), Positives = 184/220 (83%), Gaps = 12/220 (5%) Frame = +2 Query: 83 RQSTLDSFIQRNNH----------CQVVGNEESNNLGCYCAIDLEAAKTWIYPVN--IPL 226 RQSTLD FI R H C V N+ S +G ID EAAKTWIYPVN +PL Sbjct: 62 RQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVG----IDPEAAKTWIYPVNGSVPL 117 Query: 227 RDYQLSITKTALFANTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVLQQI 406 RDYQ +ITKTALF+NTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVFAAPSRPLV+QQI Sbjct: 118 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQI 177 Query: 407 EACHNTVGIPQEWAIDLTGQTNPSKRAYLWKAKRVFFVTPQVLEKDIQSGTCLVKHLVCL 586 EACHN VGIPQEW IDLTGQT PSKRA+LWK+KRVFFVTPQVLEKDIQSGTCL +LVCL Sbjct: 178 EACHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCL 237 Query: 587 VIDEAHRASGNYSYCVAVRELMAVPLQFRILALTATPGSK 706 VIDEAHRA GNYSYCV VRELMAVP+Q RILALTATPGSK Sbjct: 238 VIDEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSK 277 >ref|NP_174785.1| fanconi anemia group M protein [Arabidopsis thaliana] gi|332193685|gb|AEE31806.1| fanconi anemia group M protein [Arabidopsis thaliana] Length = 1324 Score = 335 bits (859), Expect = 5e-90 Identities = 171/218 (78%), Positives = 182/218 (83%), Gaps = 10/218 (4%) Frame = +2 Query: 83 RQSTLDSFIQRNNH----------CQVVGNEESNNLGCYCAIDLEAAKTWIYPVNIPLRD 232 RQSTLD FI R H C V N+ S +G ID EAAKTWIYP +PLRD Sbjct: 62 RQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVG----IDPEAAKTWIYPGFVPLRD 117 Query: 233 YQLSITKTALFANTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVLQQIEA 412 YQ +ITKTALF+NTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVFAAPSRPLV+QQIEA Sbjct: 118 YQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEA 177 Query: 413 CHNTVGIPQEWAIDLTGQTNPSKRAYLWKAKRVFFVTPQVLEKDIQSGTCLVKHLVCLVI 592 CHN VGIPQEW IDLTGQT PSKRA+LWK+KRVFFVTPQVLEKDIQSGTCL +LVCLVI Sbjct: 178 CHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVI 237 Query: 593 DEAHRASGNYSYCVAVRELMAVPLQFRILALTATPGSK 706 DEAHRA GNYSYCV VRELMAVP+Q RILALTATPGSK Sbjct: 238 DEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSK 275 >ref|NP_001185141.1| fanconi anemia group M protein [Arabidopsis thaliana] gi|332193686|gb|AEE31807.1| fanconi anemia group M protein [Arabidopsis thaliana] Length = 1390 Score = 335 bits (859), Expect = 5e-90 Identities = 171/218 (78%), Positives = 182/218 (83%), Gaps = 10/218 (4%) Frame = +2 Query: 83 RQSTLDSFIQRNNH----------CQVVGNEESNNLGCYCAIDLEAAKTWIYPVNIPLRD 232 RQSTLD FI R H C V N+ S +G ID EAAKTWIYP +PLRD Sbjct: 62 RQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVG----IDPEAAKTWIYPGFVPLRD 117 Query: 233 YQLSITKTALFANTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVLQQIEA 412 YQ +ITKTALF+NTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVFAAPSRPLV+QQIEA Sbjct: 118 YQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEA 177 Query: 413 CHNTVGIPQEWAIDLTGQTNPSKRAYLWKAKRVFFVTPQVLEKDIQSGTCLVKHLVCLVI 592 CHN VGIPQEW IDLTGQT PSKRA+LWK+KRVFFVTPQVLEKDIQSGTCL +LVCLVI Sbjct: 178 CHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVI 237 Query: 593 DEAHRASGNYSYCVAVRELMAVPLQFRILALTATPGSK 706 DEAHRA GNYSYCV VRELMAVP+Q RILALTATPGSK Sbjct: 238 DEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSK 275 >ref|XP_002891189.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp. lyrata] gi|297337031|gb|EFH67448.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp. lyrata] Length = 1321 Score = 335 bits (859), Expect = 5e-90 Identities = 173/222 (77%), Positives = 182/222 (81%), Gaps = 14/222 (6%) Frame = +2 Query: 83 RQSTLDSFIQRNNHC---QVVGNEESNNLGC---------YCAIDLEAAKTWIYPVN--I 220 RQSTLD FI R H QVV + C ID EAAKTWIYPVN + Sbjct: 64 RQSTLDKFIGRTEHRPENQVVSQSNFDEFECGGNDDDKSPLVGIDPEAAKTWIYPVNGSV 123 Query: 221 PLRDYQLSITKTALFANTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVLQ 400 PLRDYQ +ITKTALF+NTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLV+Q Sbjct: 124 PLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQ 183 Query: 401 QIEACHNTVGIPQEWAIDLTGQTNPSKRAYLWKAKRVFFVTPQVLEKDIQSGTCLVKHLV 580 QIEACHN VGIPQEW IDLTGQT PSKRA+LWK+KRVFFVTPQVLEKDIQSGTCL +LV Sbjct: 184 QIEACHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLV 243 Query: 581 CLVIDEAHRASGNYSYCVAVRELMAVPLQFRILALTATPGSK 706 CLVIDEAHRA GNYSYCV VRELMAVP+Q RILALTATPGSK Sbjct: 244 CLVIDEAHRALGNYSYCVVVRELMAVPVQLRILALTATPGSK 285 >ref|XP_002526811.1| protein with unknown function [Ricinus communis] gi|223533815|gb|EEF35546.1| protein with unknown function [Ricinus communis] Length = 1351 Score = 331 bits (848), Expect = 1e-88 Identities = 166/214 (77%), Positives = 184/214 (85%), Gaps = 5/214 (2%) Frame = +2 Query: 83 RQSTLDSFIQRNNHCQVV-GN----EESNNLGCYCAIDLEAAKTWIYPVNIPLRDYQLSI 247 +QSTL+ FI + GN ++ N + C ID EAAKTWIYPVN+P+RDYQL+I Sbjct: 61 KQSTLERFIGKTVRPDPPPGNPTVIDDENGVSCI-EIDAEAAKTWIYPVNVPVRDYQLAI 119 Query: 248 TKTALFANTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVLQQIEACHNTV 427 TKTALF+NTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVFAAPSRPLV+QQIEACHN V Sbjct: 120 TKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPDGKIVFAAPSRPLVMQQIEACHNIV 179 Query: 428 GIPQEWAIDLTGQTNPSKRAYLWKAKRVFFVTPQVLEKDIQSGTCLVKHLVCLVIDEAHR 607 GIPQEW ID+TGQ +P+KRA WK KR+FFVTPQVLEKDIQ+GTCLVKHLVCLVIDEAHR Sbjct: 180 GIPQEWTIDMTGQLSPAKRACFWKTKRMFFVTPQVLEKDIQAGTCLVKHLVCLVIDEAHR 239 Query: 608 ASGNYSYCVAVRELMAVPLQFRILALTATPGSKQ 709 A GNYSYCVAV ELMAVP+Q RILALTATPGSKQ Sbjct: 240 ALGNYSYCVAVCELMAVPIQLRILALTATPGSKQ 273