BLASTX nr result

ID: Coptis25_contig00028377 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028377
         (650 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002336811.1| predicted protein [Populus trichocarpa] gi|2...    80   3e-13
ref|XP_004151750.1| PREDICTED: uncharacterized protein LOC101220...    79   6e-13
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    78   1e-12
ref|XP_002333406.1| predicted protein [Populus trichocarpa] gi|2...    78   1e-12
ref|XP_002317320.1| predicted protein [Populus trichocarpa] gi|2...    78   2e-12

>ref|XP_002336811.1| predicted protein [Populus trichocarpa] gi|222836943|gb|EEE75336.1|
           predicted protein [Populus trichocarpa]
          Length = 598

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 40/98 (40%), Positives = 50/98 (51%)
 Frame = +3

Query: 3   MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
           +E W   G S V SA+G+P+  D  T    R +YARVCVEID       +  +       
Sbjct: 75  LEYWTIKGLSCVASAIGVPLHADHTTLLCKRLSYARVCVEIDASKTLVKEYDLRCPNGLF 134

Query: 183 YKVSFEYNWKPPKCSSCKVFGHSDHKCPKEDIMNTKKV 296
             +S EY W P KCS C VFGH+   CP  +I N K V
Sbjct: 135 ITISAEYEWIPSKCSDCNVFGHTTALCPNNNIDNLKVV 172


>ref|XP_004151750.1| PREDICTED: uncharacterized protein LOC101220238, partial [Cucumis
           sativus]
          Length = 169

 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +3

Query: 3   MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
           +E+W   G   V SA+G P+  D  T+   R +YAR+CVE++ D   P +I V L +   
Sbjct: 62  LELWTDAGLVVVASAIGKPLSVDLATKERCRLSYARICVELNVDSTMPIEITVNL-RGEE 120

Query: 183 YKVSFEYNWKPPKCSSCKVFGHSDHKCPKE-DIMNTKK 293
           + V   Y WKP KC+ C  FGHS   CPK+ +I + KK
Sbjct: 121 FIVPVTYEWKPRKCNLCHSFGHSQSTCPKKIEIEDNKK 158


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
           predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/111 (38%), Positives = 55/111 (49%)
 Frame = +3

Query: 3   MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
           +E W   G S V SAVG+P+  D  T    R +YARVCVEID       +  +       
Sbjct: 251 LEYWTIKGLSCVASAVGVPLHADHTTLLRKRLSYARVCVEIDASKTLVKEYDLRCPNGLF 310

Query: 183 YKVSFEYNWKPPKCSSCKVFGHSDHKCPKEDIMNTKKVWLQKTCDGKKEEG 335
             +S EY W P KCS+C VFGH+   C   +I N K V      +GK+  G
Sbjct: 311 ITISAEYEWIPSKCSNCNVFGHTTALCATNNIDNLKVV-----AEGKRNLG 356


>ref|XP_002333406.1| predicted protein [Populus trichocarpa] gi|222836432|gb|EEE74839.1|
           predicted protein [Populus trichocarpa]
          Length = 1166

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/111 (38%), Positives = 55/111 (49%)
 Frame = +3

Query: 3   MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
           +E W   G S V SAVG+P+  D  T    R +YARVCVEID       +  +       
Sbjct: 251 LEYWTIKGLSCVASAVGVPLHADHTTLLRKRLSYARVCVEIDASKTLVKEYDLRCPNGLF 310

Query: 183 YKVSFEYNWKPPKCSSCKVFGHSDHKCPKEDIMNTKKVWLQKTCDGKKEEG 335
             +S EY W P KCS+C VFGH+   C   +I N K V      +GK+  G
Sbjct: 311 ITISAEYEWIPSKCSNCNVFGHTTALCATNNIDNLKVV-----AEGKRNLG 356



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/111 (38%), Positives = 55/111 (49%)
 Frame = +3

Query: 3    MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
            +E W   G S V SAVG+P+  D  T    R +YARVCVEID       +  +       
Sbjct: 1044 LEYWTIKGLSCVASAVGVPLHADHTTLLRKRLSYARVCVEIDASKTLVKEYDLRCPNGLF 1103

Query: 183  YKVSFEYNWKPPKCSSCKVFGHSDHKCPKEDIMNTKKVWLQKTCDGKKEEG 335
              +S EY W P KCS+C VFGH+   C   +I N K V      +GK+  G
Sbjct: 1104 ITISAEYEWIPSKCSNCNVFGHTTALCATNNIDNLKVV-----AEGKRNLG 1149


>ref|XP_002317320.1| predicted protein [Populus trichocarpa] gi|222860385|gb|EEE97932.1|
           predicted protein [Populus trichocarpa]
          Length = 761

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 42/111 (37%), Positives = 55/111 (49%)
 Frame = +3

Query: 3   MEMWNKDGFSQVGSAVGIPMFTDRLTENMSRTNYARVCVEIDTDCPYPDDIPVILDQRRA 182
           +E W   G S V SA+G+P+  D  T    R +YARVCVEID       +  +       
Sbjct: 251 LEYWTIKGLSCVASAIGVPLHADHTTFLRKRLSYARVCVEIDASKTLVKEYDLRCPNGLF 310

Query: 183 YKVSFEYNWKPPKCSSCKVFGHSDHKCPKEDIMNTKKVWLQKTCDGKKEEG 335
             +S EY W P KCS+C VFGH+   C   +I N K V      +GK+  G
Sbjct: 311 ITISAEYEWIPSKCSNCNVFGHTRTLCATNNINNLKVV-----AEGKRNLG 356


Top