BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028374
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...   219   1e-55
emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]   219   1e-55
ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containi...   210   1e-52
ref|XP_002530223.1| pentatricopeptide repeat-containing protein,...   209   2e-52
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...   206   2e-51

>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  219 bits (559), Expect = 1e-55
 Identities = 105/154 (68%), Positives = 129/154 (83%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           L++EML +G+KADI+TYNALILGLC EG+TK AAYLVKELD+ENLVPN+STFS LI GQC
Sbjct: 441 LHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQC 500

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
           VR+NSERAFQ+YKSM +SGCHPN +TFKMLISTFCKN+DFDGAV+V+ EM ER + P+S 
Sbjct: 501 VRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSD 560

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLPKG 463
            L ELC GL    K  LA K+C +++ + L+P+G
Sbjct: 561 TLSELCRGLWLSGKEELALKLCKEMEMKHLMPEG 594



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/118 (25%), Positives = 57/118 (48%)
 Frame = +2

Query: 5   YEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCV 184
           Y EM  + +  ++ T N ++   CK GK + A  + K ++     P  ++++ LI G C 
Sbjct: 302 YREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCN 361

Query: 185 RQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPES 358
           +       ++   M+K+G  P+  TF  LI+ FC+      A ++ +EM    + P +
Sbjct: 362 KGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNT 419



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 38/152 (25%), Positives = 69/152 (45%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           +++ M   G    I +YN LI G C +G   +   L   ++K  + P+  TF+ LI G C
Sbjct: 336 VFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFC 395

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
                  A +I+  MK +   PN+ T+  LI+ + +  + +   ++ +EM+   +  +  
Sbjct: 396 RGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADIL 455

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLP 457
               L  GL    +   A  +  +L R  L+P
Sbjct: 456 TYNALILGLCMEGRTKKAAYLVKELDRENLVP 487


>emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  219 bits (559), Expect = 1e-55
 Identities = 105/154 (68%), Positives = 129/154 (83%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           L++EML +G+KADI+TYNALILGLC EG+TK AAYLVKELD+ENLVPN+STFS LI GQC
Sbjct: 308 LHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQC 367

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
           VR+NSERAFQ+YKSM +SGCHPN +TFKMLISTFCKN+DFDGAV+V+ EM ER + P+S 
Sbjct: 368 VRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSD 427

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLPKG 463
            L ELC GL    K  LA K+C +++ + L+P+G
Sbjct: 428 TLSELCRGLWLSGKEELALKLCKEMEMKHLMPEG 461



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/118 (25%), Positives = 58/118 (49%)
 Frame = +2

Query: 5   YEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCV 184
           Y EM  + +  ++ T N ++   CK GK + A  + K+++     P  ++++ LI G C 
Sbjct: 169 YREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCN 228

Query: 185 RQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPES 358
           +       ++   M+K+G  P+  TF  LI+ FC+      A ++ +EM    + P +
Sbjct: 229 KGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNT 286



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/152 (25%), Positives = 70/152 (46%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           ++++M   G    I +YN LI G C +G   +   L   ++K  + P+  TF+ LI G C
Sbjct: 203 VFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFC 262

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
                  A +I+  MK +   PN+ T+  LI+ + +  + +   ++ +EM+   +  +  
Sbjct: 263 RGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADIL 322

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLP 457
               L  GL    +   A  +  +L R  L+P
Sbjct: 323 TYNALILGLCMEGRTKKAAYLVKELDRENLVP 354


>ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356526065|ref|XP_003531640.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  210 bits (534), Expect = 1e-52
 Identities = 102/154 (66%), Positives = 125/154 (81%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           +YEEM+ +G+KADI+TYNALILGLCK+GKTK AA  V+ELDKENLVPNASTFS LI GQC
Sbjct: 352 VYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQC 411

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
           VR NSERAF IY+SM +SGC PN  TF+MLIS FCKN+DFDGAVQVL +M+ R ++P+  
Sbjct: 412 VRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLS 471

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLPKG 463
            + ELC+GL R  K  LA  +C++++ RRLLP G
Sbjct: 472 TMSELCDGLCRCGKNQLALALCSEMEVRRLLPDG 505



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLV-PNASTFSNLIMGQ 178
           + E+M+  G+  ++V++N LI G C +G     A  VK L  EN V PN  TF+ LI G 
Sbjct: 247 MLEKMMDMGLSPNVVSFNTLISGYCNKG-LFGLALKVKSLMVENGVQPNVVTFNTLINGF 305

Query: 179 CVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPES 358
           C  +    A +++  MK +   P+  T+  L++ + +  D +  V+V  EMM   L  + 
Sbjct: 306 CKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADI 365

Query: 359 GLLVELCEGLRRYRKFNLATKVCTDLQRRRLLP 457
                L  GL +  K   A     +L +  L+P
Sbjct: 366 LTYNALILGLCKDGKTKKAAGFVRELDKENLVP 398



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/124 (29%), Positives = 62/124 (50%)
 Frame = +2

Query: 14  MLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQN 193
           M+ +GV+ ++VT+N LI G CKE K   A  +  E+   N+ P+  T++ L+ G     +
Sbjct: 286 MVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGD 345

Query: 194 SERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESGLLVE 373
           SE   ++Y+ M ++G   +  T+  LI   CK+     A   + E+ +  L P +     
Sbjct: 346 SEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSA 405

Query: 374 LCEG 385
           L  G
Sbjct: 406 LITG 409



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 37/141 (26%), Positives = 62/141 (43%)
 Frame = +2

Query: 29  VKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAF 208
           V  ++ T N +I   C  G+ +    +++++    L PN  +F+ LI G C +     A 
Sbjct: 221 VSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLAL 280

Query: 209 QIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESGLLVELCEGL 388
           ++   M ++G  PN  TF  LI+ FCK      A +V NEM    + P       L  G 
Sbjct: 281 KVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGY 340

Query: 389 RRYRKFNLATKVCTDLQRRRL 451
            +     +  +V  ++ R  L
Sbjct: 341 GQVGDSEMGVRVYEEMMRNGL 361


>ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530270|gb|EEF32170.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  209 bits (532), Expect = 2e-52
 Identities = 103/154 (66%), Positives = 122/154 (79%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           LYEEM  +GVKADI+TYNALILGLCKEGKTK AAY+VKELDKENLVPNASTFS LI GQC
Sbjct: 343 LYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQC 402

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
           +R NS+RAFQ+YKSM + GCHPN  TF ML+S FCKN+DF+GA  VL EM ERC TP S 
Sbjct: 403 IRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSD 462

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLPKG 463
           +L E+  GL    K +LA K+ ++L+ R ++ KG
Sbjct: 463 VLSEIYHGLCCCGKEHLAMKLSSELKARHMMTKG 496



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 38/146 (26%), Positives = 68/146 (46%)
 Frame = +2

Query: 5   YEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCV 184
           Y+EM    +  ++ T N ++   CK GK + A  + +E++   + PN ++++ LIMG C 
Sbjct: 204 YKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCR 263

Query: 185 RQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESGL 364
           +     A ++  SM+  G   N  TF  LI  FCK      A +V +EM    + P +  
Sbjct: 264 KGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTIT 323

Query: 365 LVELCEGLRRYRKFNLATKVCTDLQR 442
              L  G  +     +  ++  ++ R
Sbjct: 324 YNTLINGHSQMGNSEMGRRLYEEMSR 349



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 38/152 (25%), Positives = 70/152 (46%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           ++EEM   G+  +  +YN LI+G C++G   +A  L   +  + +  N  TF++LI G C
Sbjct: 238 VFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFC 297

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
                  A +++  MK     PN+ T+  LI+   +  + +   ++  EM    +  +  
Sbjct: 298 KEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADIL 357

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLP 457
               L  GL +  K   A  +  +L +  L+P
Sbjct: 358 TYNALILGLCKEGKTKKAAYMVKELDKENLVP 389


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  206 bits (523), Expect = 2e-51
 Identities = 99/153 (64%), Positives = 124/153 (81%)
 Frame = +2

Query: 2   LYEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQC 181
           +YEEM+ +GVKADI+TYNALILGLCKEGKTK AA+LVKELDKENLVPNAST+S LI GQC
Sbjct: 326 VYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQC 385

Query: 182 VRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESG 361
            R+NS+RAFQ+YKSM +SGCHPN  TFKML S F KN+DF+GA  VL +M  R +  +S 
Sbjct: 386 ARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSN 445

Query: 362 LLVELCEGLRRYRKFNLATKVCTDLQRRRLLPK 460
            L+E+ +GL +  K NLA K+C +++ RRL+P+
Sbjct: 446 TLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/146 (29%), Positives = 70/146 (47%)
 Frame = +2

Query: 5   YEEMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCV 184
           Y EM    +  +  T+N ++  LCK GK + A  +++E++   + PN  +++ LI G C 
Sbjct: 187 YREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCN 246

Query: 185 RQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESGL 364
           +     A ++   M K+G  PN  TF  LI  FCK      A +  +EM    +TP +  
Sbjct: 247 KGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVT 306

Query: 365 LVELCEGLRRYRKFNLATKVCTDLQR 442
              L  G  +    N+A KV  ++ R
Sbjct: 307 YNTLINGYGQVGNSNMAGKVYEEMMR 332



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 44/149 (29%), Positives = 69/149 (46%)
 Frame = +2

Query: 11  EMLVHGVKADIVTYNALILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQ 190
           EM   G+  ++V+YN LI G C +G    A  L   + K  L PN  TF++LI G C   
Sbjct: 224 EMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEG 283

Query: 191 NSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKNDDFDGAVQVLNEMMERCLTPESGLLV 370
               A + +  MK     PN+ T+  LI+ + +  + + A +V  EMM   +  +     
Sbjct: 284 KLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYN 343

Query: 371 ELCEGLRRYRKFNLATKVCTDLQRRRLLP 457
            L  GL +  K   A  +  +L +  L+P
Sbjct: 344 ALILGLCKEGKTKKAAFLVKELDKENLVP 372