BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028346
         (1437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   322   1e-85
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   321   3e-85
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   320   4e-85
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   320   4e-85
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   305   1e-80

>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  322 bits (826), Expect = 1e-85
 Identities = 171/494 (34%), Positives = 271/494 (54%), Gaps = 15/494 (3%)
 Frame = +1

Query: 1    VEWCFLHQIFEKLGFSRKWIDMIKVCLETVSFRVLLNGSPLSHLFPQRGLRQGDPLSPYL 180
            VEW FLH +  KLGF   W+++I  C+ TV++R+ +NG       P+RGLRQGDPLSPYL
Sbjct: 813  VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 872

Query: 181  FILVTEALSRILKQAEDENRISGIKVRRGSPPISHLLYADDLIMFCKANLDEINSVKDIL 360
            F+L  E  S +L + E+E R+ GI++ +G+P +SHLL+ADD ++ C+AN  E   ++ IL
Sbjct: 873  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 932

Query: 361  QKYCNASGQEVSWEKSSAFFSRNVHNTHQKMILRRWKVRRFTEKEKYLGVPIILGKKKGE 540
            Q Y   SGQ ++ +KS+  FS N  +  +  ++    ++R T  EKYLG+P+ +G+ + +
Sbjct: 933  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 992

Query: 541  DFEYLLESLQRKVSGWKAKILSQASRTTLVKSVGQAVPIYAMGVYALPNRINERIDRLNR 720
             F YL E + +++ GWK K+LS+A +  L+K+V QA+P +AMG + L   + ++I ++  
Sbjct: 993  IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIA 1052

Query: 721  DFWWNGTTNTTAWHTMSWEKLCKSKANGGLGFRKAKEMNLAMLAKHSWRLITDENSIWSR 900
             +WW+        H +SW KL   K  GGLGFR     NLAMLAK  WRLI D +S+ SR
Sbjct: 1053 KYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSR 1112

Query: 901  TFNSIY--KWDCFNNQDGKKKKPQSFFWRGVQLSMKAVKEGFMWLLGNGSRIKTFSEPWL 1074
               + Y    DCF     K+    S+ WR +Q  ++ ++ G +W +G+GS+I  +++PW+
Sbjct: 1113 VLRAKYFPLGDCFR---PKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWI 1169

Query: 1075 L--FLEKPLILGNHLNPERVNLNLTRRVSDLSRENEEEWDITRLGDLFPNLISDCIKTLT 1248
               +  KP      + P     NL  +V +L       WD   L   F       IK++ 
Sbjct: 1170 PRGWSRKP------MTPR--GANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIP 1221

Query: 1249 IKPNVXXXXXXXXXXXGVLTVRSAYKLLAKEYEEGESSRMNKKSI-----------RRIW 1395
            +   +           G  TV+SAYK+  +   E  +SR     +           +++W
Sbjct: 1222 VHVEMEDVLAWHFDARGCFTVKSAYKV--QREMERRASRNGCPGVSNWESGDDDFWKKLW 1279

Query: 1396 KIKTDAATQLFIWK 1437
            K+      + F+W+
Sbjct: 1280 KLGVPGKIKHFLWR 1293


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  321 bits (822), Expect = 3e-85
 Identities = 170/494 (34%), Positives = 271/494 (54%), Gaps = 15/494 (3%)
 Frame = +1

Query: 1    VEWCFLHQIFEKLGFSRKWIDMIKVCLETVSFRVLLNGSPLSHLFPQRGLRQGDPLSPYL 180
            VEW FLH +  KLGF   W+++I  C+ TV++R+ +NG       P RGLRQGDPLSPYL
Sbjct: 840  VEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYL 899

Query: 181  FILVTEALSRILKQAEDENRISGIKVRRGSPPISHLLYADDLIMFCKANLDEINSVKDIL 360
            F+L  E  S +L + E+E R+ GI++ +G+P +SHLL+ADD ++ C+AN  E   ++ IL
Sbjct: 900  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 959

Query: 361  QKYCNASGQEVSWEKSSAFFSRNVHNTHQKMILRRWKVRRFTEKEKYLGVPIILGKKKGE 540
            Q Y   SGQ ++ +KS+  FS N  +  ++ ++    ++R T  E+YLG+P+ +G+ + +
Sbjct: 960  QIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTK 1019

Query: 541  DFEYLLESLQRKVSGWKAKILSQASRTTLVKSVGQAVPIYAMGVYALPNRINERIDRLNR 720
             F YL E + +++ GWK K+LS+A +  L+K+V QA+P +AMG + L   + ++I ++  
Sbjct: 1020 IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIA 1079

Query: 721  DFWWNGTTNTTAWHTMSWEKLCKSKANGGLGFRKAKEMNLAMLAKHSWRLITDENSIWSR 900
             +WW+        H +SW KL   K  GGLGFR     NLAMLAK  WRLI D +S+ SR
Sbjct: 1080 KYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSR 1139

Query: 901  TFNSIY--KWDCFNNQDGKKKKPQSFFWRGVQLSMKAVKEGFMWLLGNGSRIKTFSEPWL 1074
               + Y    DCF     K+    S+ WR +Q  ++ ++ G +W +G+GS+I  +++PW+
Sbjct: 1140 VLRAKYFPLGDCFR---PKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWI 1196

Query: 1075 L--FLEKPLILGNHLNPERVNLNLTRRVSDLSRENEEEWDITRLGDLFPNLISDCIKTLT 1248
               +  KP      + P     NL  +V +L       WD   L   F       IK++ 
Sbjct: 1197 PRGWSRKP------MTPR--GANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIP 1248

Query: 1249 IKPNVXXXXXXXXXXXGVLTVRSAYKLLAKEYEEGESSRMNKKSI-----------RRIW 1395
            +   +           G  TV+SAYK+  +   E  +SR     +           +++W
Sbjct: 1249 VHVEMEDVLAWHFDARGCFTVKSAYKV--QREMERRASRNGCPGVSNWESGDDDFWKKLW 1306

Query: 1396 KIKTDAATQLFIWK 1437
            K+      + F+W+
Sbjct: 1307 KLGVPGKIKHFLWR 1320


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  320 bits (821), Expect = 4e-85
 Identities = 170/494 (34%), Positives = 270/494 (54%), Gaps = 15/494 (3%)
 Frame = +1

Query: 1    VEWCFLHQIFEKLGFSRKWIDMIKVCLETVSFRVLLNGSPLSHLFPQRGLRQGDPLSPYL 180
            VEW FLH +  KLGF   W+++I  C+ TV++R+ +NG       P+RGLRQGDPLSPYL
Sbjct: 785  VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 844

Query: 181  FILVTEALSRILKQAEDENRISGIKVRRGSPPISHLLYADDLIMFCKANLDEINSVKDIL 360
            F+L  E  S +L + E+E R+ GI++ +G+P +SHLL+ADD ++ C+AN  E   ++ IL
Sbjct: 845  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 904

Query: 361  QKYCNASGQEVSWEKSSAFFSRNVHNTHQKMILRRWKVRRFTEKEKYLGVPIILGKKKGE 540
            Q Y   SGQ ++ +KS+  FS N  +  +  ++    ++R T  EKYLG+P+ +G+ + +
Sbjct: 905  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 964

Query: 541  DFEYLLESLQRKVSGWKAKILSQASRTTLVKSVGQAVPIYAMGVYALPNRINERIDRLNR 720
             F YL E + +++ GWK K+LS+A +  L+K+V Q +P +AMG + L   + ++I ++  
Sbjct: 965  IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIA 1024

Query: 721  DFWWNGTTNTTAWHTMSWEKLCKSKANGGLGFRKAKEMNLAMLAKHSWRLITDENSIWSR 900
             +WW+        H +SW KL   K  GGLGFR     NLAMLAK  WRLI D +S+ SR
Sbjct: 1025 KYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSR 1084

Query: 901  TFNSIY--KWDCFNNQDGKKKKPQSFFWRGVQLSMKAVKEGFMWLLGNGSRIKTFSEPWL 1074
               + Y    DCF     K+    S+ WR +Q  ++ ++ G +W +G+GS+I  +++PW+
Sbjct: 1085 VLRAKYFPLGDCFR---PKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWI 1141

Query: 1075 L--FLEKPLILGNHLNPERVNLNLTRRVSDLSRENEEEWDITRLGDLFPNLISDCIKTLT 1248
               +  KP      + P     NL  +V +L       WD   L   F       IK++ 
Sbjct: 1142 PRGWSRKP------MTPR--GANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIP 1193

Query: 1249 IKPNVXXXXXXXXXXXGVLTVRSAYKLLAKEYEEGESSRMNKKSI-----------RRIW 1395
            +   +           G  TV+SAYK+  +   E  +SR     +           +++W
Sbjct: 1194 VHVEMEDVLAWHFDARGCFTVKSAYKV--QREMERRASRNGCPGVSNWESGDDDFWKKLW 1251

Query: 1396 KIKTDAATQLFIWK 1437
            K+      + F+W+
Sbjct: 1252 KLGVPGKIKHFLWR 1265


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  320 bits (821), Expect = 4e-85
 Identities = 170/494 (34%), Positives = 270/494 (54%), Gaps = 15/494 (3%)
 Frame = +1

Query: 1    VEWCFLHQIFEKLGFSRKWIDMIKVCLETVSFRVLLNGSPLSHLFPQRGLRQGDPLSPYL 180
            VEW FLH +  KLGF   W+++I  C+ TV++R+ +NG       P+RGLRQGDPLSPYL
Sbjct: 781  VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 840

Query: 181  FILVTEALSRILKQAEDENRISGIKVRRGSPPISHLLYADDLIMFCKANLDEINSVKDIL 360
            F+L  E  S +L + E+E R+ GI++ +G+P +SHLL+ADD ++ C+AN  E   ++ IL
Sbjct: 841  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 900

Query: 361  QKYCNASGQEVSWEKSSAFFSRNVHNTHQKMILRRWKVRRFTEKEKYLGVPIILGKKKGE 540
            Q Y   SGQ ++ +KS+  FS N  +  +  ++    ++R T  EKYLG+P+ +G+ + +
Sbjct: 901  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 960

Query: 541  DFEYLLESLQRKVSGWKAKILSQASRTTLVKSVGQAVPIYAMGVYALPNRINERIDRLNR 720
             F YL E + +++ GWK K+LS+A +  L+K+V Q +P +AMG + L   + ++I ++  
Sbjct: 961  IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIA 1020

Query: 721  DFWWNGTTNTTAWHTMSWEKLCKSKANGGLGFRKAKEMNLAMLAKHSWRLITDENSIWSR 900
             +WW+        H +SW KL   K  GGLGFR     NLAMLAK  WRLI D +S+ SR
Sbjct: 1021 KYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSR 1080

Query: 901  TFNSIY--KWDCFNNQDGKKKKPQSFFWRGVQLSMKAVKEGFMWLLGNGSRIKTFSEPWL 1074
               + Y    DCF     K+    S+ WR +Q  ++ ++ G +W +G+GS+I  +++PW+
Sbjct: 1081 VLRAKYFPLGDCFR---PKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWI 1137

Query: 1075 L--FLEKPLILGNHLNPERVNLNLTRRVSDLSRENEEEWDITRLGDLFPNLISDCIKTLT 1248
               +  KP      + P     NL  +V +L       WD   L   F       IK++ 
Sbjct: 1138 PRGWSRKP------MTPR--GANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIP 1189

Query: 1249 IKPNVXXXXXXXXXXXGVLTVRSAYKLLAKEYEEGESSRMNKKSI-----------RRIW 1395
            +   +           G  TV+SAYK+  +   E  +SR     +           +++W
Sbjct: 1190 VHVEMEDVLAWHFDARGCFTVKSAYKV--QREMERRASRNGCPGVSNWESGDDDFWKKLW 1247

Query: 1396 KIKTDAATQLFIWK 1437
            K+      + F+W+
Sbjct: 1248 KLGVPGKIKHFLWR 1261


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
            gi|241926916|gb|EES00061.1| hypothetical protein
            SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  305 bits (782), Expect = 1e-80
 Identities = 159/466 (34%), Positives = 260/466 (55%), Gaps = 5/466 (1%)
 Frame = +1

Query: 1    VEWCFLHQIFEKLGFSRKWIDMIKVCLETVSFRVLLNGSPLSHLFPQRGLRQGDPLSPYL 180
            VEW FL  +  K+GF  KW+ +I  C+ TV++++ +N S    +FPQRGLRQGDPLSPYL
Sbjct: 165  VEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQRGLRQGDPLSPYL 224

Query: 181  FILVTEALSRILKQAEDENRISGIKVRRGSPPISHLLYADDLIMFCKANLDEINSVKDIL 360
            FI+  E LS +L++AE + +I GIK+ RG+P ++HL +ADD ++  +A   +   ++ IL
Sbjct: 225  FIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRARASDALELRRIL 284

Query: 361  QKYCNASGQEVSWEKSSAFFSRNVHNTHQKMILRRWKVRRFTEKEKYLGVPIILGKKKGE 540
              Y  ASGQ ++ EKSS  FS N     + ++     +      EKYLG+P+ +GK + +
Sbjct: 285  DVYEKASGQVINKEKSSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLGLPVNIGKSRKK 344

Query: 541  DFEYLLESLQRKVSGWKAKILSQASRTTLVKSVGQAVPIYAMGVYALPNRINERIDRLNR 720
             FEY+ + +  ++ GW+ K+LS+A +  L+K+V Q++P YAM  + L   + + +  +  
Sbjct: 345  PFEYIKKKIWSRIQGWQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIG 404

Query: 721  DFWWNGTTNTTAWHTMSWEKLCKSKANGGLGFRKAKEMNLAMLAKHSWRLITDENSIWSR 900
             +WW+        H +SWEKL +SK  GGLGFR     NLAML++ +WRL+T+ +S+  +
Sbjct: 405  RYWWSQQDKANKIHWISWEKLTQSKEKGGLGFRDLHLFNLAMLSRQAWRLLTNPDSLCGQ 464

Query: 901  TFNSIYKWDCFNNQDGKKKKPQ---SFFWRGVQLSMKAVKEGFMWLLGNGSRIKTFSEPW 1071
               + Y    F + D     P+   S+ WR +   +  +KEG +W +GNG  +K +  PW
Sbjct: 465  VLKARY----FPHSDILHCSPRPRISYTWRSILKGVALLKEGIIWRIGNGKNVKIWEHPW 520

Query: 1072 LLFLEKPLILGNHLNPERVNLNLTRRVSDLSRENEEEWDITRLGDLFPNLISDCIKTLTI 1251
            +       I    + P     +L  RV++L      EWD   + DLF    ++ I  + I
Sbjct: 521  I----PKGITRKPITPR--GASLLTRVNELINPVTGEWDEQLVNDLFWPQDAEEILQIPI 574

Query: 1252 KPNVXXXXXXXXXXXGVLTVRSAYKLLA--KEYEEGESSRMNKKSI 1383
              ++           G+ +V+SAYKL    ++ + G+ +  +K  +
Sbjct: 575  DEHMEDWLAWHFDATGLFSVKSAYKLAVSIRDADRGDDASSSKNEV 620