BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028338
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   105   4e-21
ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat...   105   4e-21
gb|ABR17838.1| unknown [Picea sitchensis]                             101   5e-20
ref|XP_003617808.1| Pentatricopeptide repeat-containing protein ...   100   1e-19
ref|XP_002512645.1| pentatricopeptide repeat-containing protein,...   100   2e-19

>ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  105 bits (262), Expect = 4e-21
 Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
 Frame = -1

Query: 450 MKSHARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIIS 271
           ++ HA  LK GL + P+V+  L+N Y  +Q+     ++ Q+F++ P   K +T W+S+IS
Sbjct: 45  LQLHAHILKFGLQTIPLVSHNLINLYSKTQLP---LFSLQVFDETP--KKSSTTWSSVIS 99

Query: 270 AFNKSGNSYNAIQLFSQMLHQ-TKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYS 94
           AF ++     A+Q F +ML+   +P+  IY +  +AC   +    +GK++H L +KTGY 
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF-LRRSDVGKSVHCLAVKTGYY 158

Query: 93  PNVVVETSLLDMYAKWGLVEFSRILFDEMPE 1
            +V V +SL+DMYAK G +  +R LFDEMPE
Sbjct: 159 CDVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   +K G   +  V + L++ Y        +  A  LF+++P RN     W+ +I  + 
Sbjct: 149 HCLAVKTGYYCDVFVGSSLVDMYAKC---GEIGDARHLFDEMPERN--VVSWSGMIYGYA 203

Query: 261 KSGNSYNAIQLFSQ-MLHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +  +   A+ LF Q ++     N F +++V+R C++S  +L+LGK IH L +K  +  + 
Sbjct: 204 QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSST-FLELGKLIHGLCLKMSFDSSS 262

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMP 4
            V ++L+ +Y+K G++E +  +FDE+P
Sbjct: 263 FVGSALISLYSKCGVIEGAYQVFDEIP 289



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   LK+  DS+  V + L++ Y    V   +  AYQ+F+++P RN    LW S++ A  
Sbjct: 250 HGLCLKMSFDSSSFVGSALISLYSKCGV---IEGAYQVFDEIPTRN--LGLWNSMLIACA 304

Query: 261 KSGNSYNAIQLFSQMLH-QTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +  ++     LF +M +   KPN   + +V+ AC +    ++ G+   SL+   G  P  
Sbjct: 305 QHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYAC-SHAGLVEKGREYFSLMRDYGIEPET 363

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMP 4
               SL+D+  + G ++ +  +  +MP
Sbjct: 364 EHYASLVDLLGRAGKLQEAVSVIKQMP 390


>ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  105 bits (262), Expect = 4e-21
 Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
 Frame = -1

Query: 450 MKSHARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIIS 271
           ++ HA  LK GL + P+V+  L+N Y  +Q+     ++ Q+F++ P   K +T W+S+IS
Sbjct: 45  LQLHAHILKFGLQTIPLVSHNLINLYSKTQLP---LFSLQVFDETP--KKSSTTWSSVIS 99

Query: 270 AFNKSGNSYNAIQLFSQMLHQ-TKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYS 94
           AF ++     A+Q F +ML+   +P+  IY +  +AC   +    +GK++H L +KTGY 
Sbjct: 100 AFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF-LRRSDVGKSVHCLAVKTGYY 158

Query: 93  PNVVVETSLLDMYAKWGLVEFSRILFDEMPE 1
            +V V +SL+DMYAK G +  +R LFDEMPE
Sbjct: 159 CDVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   +K G   +  V + L++ Y        +  A  LF+++P RN     W+ +I  + 
Sbjct: 149 HCLAVKTGYYCDVFVGSSLVDMYAKC---GEIGDARHLFDEMPERN--VVSWSGMIYGYA 203

Query: 261 KSGNSYNAIQLFSQ-MLHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +  +   A+ LF Q ++     N F +++V+R C++S  +L+LGK IH L +K  +  + 
Sbjct: 204 QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSST-FLELGKLIHGLCLKMSFDSSS 262

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMP 4
            V ++L+ +Y+K G++E +  +FDE+P
Sbjct: 263 FVGSALISLYSKCGVIEGAYQVFDEIP 289



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   LK+  DS+  V + L++ Y    V   +  AYQ+F+++P RN    LW S++ A  
Sbjct: 250 HGLCLKMSFDSSSFVGSALISLYSKCGV---IEGAYQVFDEIPTRN--LGLWNSMLIACA 304

Query: 261 KSGNSYNAIQLFSQMLH-QTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +  ++     LF +M +   KPN   + +V+ AC +    ++ G+   SL+   G  P  
Sbjct: 305 QHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYAC-SHAGLVEKGREYFSLMRDYGIEPET 363

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMP 4
               SL+D+  + G ++ +  +  +MP
Sbjct: 364 EHYASLVDLLGRAGKLQEAVSVIKQMP 390


>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  101 bits (252), Expect = 5e-20
 Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   ++ G +SN +V   L+N Y      NS   AY+LFE++P +N     W +IIS ++
Sbjct: 345 HGYAIRSGFESNDVVGNALVNMYAKCGNVNS---AYKLFERMPKKN--VVAWNAIISGYS 399

Query: 261 KSGNSYNAIQLFSQMLHQ-TKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           + G+ + A+ LF +M  Q  KP+ F   +V+ ACA  +A L+ GK IH   I++G+  NV
Sbjct: 400 QHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA-LEQGKQIHGYTIRSGFESNV 458

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMPE 1
           VV T L+D+YAK G V  ++ LF+ MPE
Sbjct: 459 VVGTGLVDIYAKCGNVNTAQKLFERMPE 486



 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
 Frame = -1

Query: 447 KSHARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISA 268
           K H   +  G +S+ IV T L + Y       SL  A Q+F+++P R  D   W +II+ 
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKC---GSLENARQVFDRMPKR--DVVSWNAIIAG 195

Query: 267 FNKSGNSYNAIQLFSQM-LHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSP 91
           ++++G  Y A+ LFS+M ++  KPN     +V+  CA  +A L+ GK IH   I++G   
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA-LEQGKQIHCYAIRSGIES 254

Query: 90  NVVVETSLLDMYAKWGLVEFSRILFDEMP 4
           +V+V   L++MYAK G V  +  LF+ MP
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMP 283



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   ++ G++S+ +V   L+N Y      N+   A++LFE++P R  D   W +II  ++
Sbjct: 244 HCYAIRSGIESDVLVVNGLVNMYAKCGNVNT---AHKLFERMPIR--DVASWNAIIGGYS 298

Query: 261 KSGNSYNAIQLFSQM-LHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
            +   + A+  F++M +   KPN     +V+ ACA   A L+ G+ IH   I++G+  N 
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA-LEQGQQIHGYAIRSGFESND 357

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMPE 1
           VV  +L++MYAK G V  +  LF+ MP+
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPK 385



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
 Frame = -1

Query: 417 LDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFNKSGNSYNA 238
           L  N +  TR ++A  N Q Q         F Q   RN +  +W   I  + K+G    A
Sbjct: 56  LRRNKVKTTREVSACAN-QTQ---------FTQTDIRN-NAVVWKETIIGYVKNGFWNKA 104

Query: 237 IQLFSQMLHQ-TKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNVVVETSLLD 61
           ++L+ QM      P+  ++ +V++AC  S + LQ G+ +H  +I  G+  +V+V T+L  
Sbjct: 105 LRLYYQMQRTGINPDKLVFLSVIKACG-SQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163

Query: 60  MYAKWGLVEFSRILFDEMPE 1
           MY K G +E +R +FD MP+
Sbjct: 164 MYTKCGSLENARQVFDRMPK 183


>ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519143|gb|AET00767.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  100 bits (249), Expect = 1e-19
 Identities = 60/147 (40%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLN-SQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAF 265
           H+  LK GL+SN  V+  +++ Y    +++NS+    +LFE++P RN  T  W +II  +
Sbjct: 361 HSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM----KLFEELPDRNDVT--WNTIIVGY 414

Query: 264 NKSGNSYNAIQLFSQML-HQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPN 88
            + G+   A+ LF+ ML H  +P    Y++V+RA A S+A L+ G  IHSL IKT Y+ +
Sbjct: 415 VQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASA-SLAALEPGLQIHSLTIKTMYNKD 473

Query: 87  VVVETSLLDMYAKWGLVEFSRILFDEM 7
            VV  SL+DMYAK G +  +R+ FD+M
Sbjct: 474 TVVANSLIDMYAKCGRINDARLTFDKM 500



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   LK   D +  V   LL  Y  S     +  A +LFE++P    D   W+ +I+ + 
Sbjct: 260 HGCALKGCYDHDLFVGIALLELYAKS---GEIIDAQRLFEEMP--KTDLIPWSLMIARYA 314

Query: 261 KSGNSYNAIQLFSQMLHQTK--PNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPN 88
           +S  S  A+ LF +M  QT   PN+F +A+V++ACA+SV+ L LGK IHS V+K G + N
Sbjct: 315 QSDRSKEALDLFLRM-RQTSVVPNNFTFASVLQACASSVS-LDLGKQIHSCVLKFGLNSN 372

Query: 87  VVVETSLLDMYAKWGLVEFSRILFDEMPE 1
           V V  +++D+YAK G +E S  LF+E+P+
Sbjct: 373 VFVSNAIMDVYAKCGEIENSMKLFEELPD 401



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 45/148 (30%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           HA   KLG  ++  V T L++AY    V+ ++  A  +F+ +    KD   WT +++ + 
Sbjct: 159 HACVYKLGHHADAFVGTALIDAY---SVRGNVDVARHVFDDICC--KDMVSWTGMVACYA 213

Query: 261 KSGNSYNAIQLFSQM-LHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           ++     ++QLF+QM +   KPN+F  +  +++C    A+  +GK++H   +K  Y  ++
Sbjct: 214 ENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAF-NVGKSVHGCALKGCYDHDL 272

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMPE 1
            V  +LL++YAK G +  ++ LF+EMP+
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPK 300



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   LK G   +      LLN Y+ S   NSL  A +LF+++P  N  T  + ++   ++
Sbjct: 58  HCHILKRGTSLDLFAQNILLNFYVQS---NSLQDASKLFDEMPQTN--TISFVTLAQGYS 112

Query: 261 KSGNSYNAIQLFSQMLHQT-KPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +    + A+    ++  +  + N F++ T+++    S+    L  T+H+ V K G+  + 
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLV-SMDLAHLCWTLHACVYKLGHHADA 171

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEM 7
            V T+L+D Y+  G V+ +R +FD++
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDI 197


>ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548606|gb|EEF50097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 716

 Score =  100 bits (248), Expect = 2e-19
 Identities = 58/149 (38%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLN-SQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAF 265
           H   LK+GLD N  V+  L++ Y    ++ NS+    +LF ++P+RN+ T  W ++I  +
Sbjct: 266 HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM----KLFMELPNRNEVT--WNTMIVGY 319

Query: 264 NKSGNSYNAIQLFSQMLH-QTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPN 88
            +SG+   A+ L+  ML  Q + +   Y++V+RACA S+A ++LG  IHSL +KT Y  +
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA-SLAAMELGTQIHSLSLKTIYDKD 378

Query: 87  VVVETSLLDMYAKWGLVEFSRILFDEMPE 1
           VVV  +L+DMYAK G ++ +R++FD + E
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSE 407



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           HA   KLG +SN  V T L++AY    V  S+  A Q F+ +    KD   WT +++ + 
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYA---VCGSVNSARQAFDAIAC--KDMVSWTGMVACYA 118

Query: 261 KSGNSYNAIQLFSQM-LHQTKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           ++    +++QLF++M +    PNHF +A V++AC    A+  +GK++H  V+KT Y  ++
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAF-SVGKSVHGCVLKTCYEMDL 177

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMPE 1
            V   LLD+Y K+G       +F+EMP+
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPK 205



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
 Frame = -1

Query: 441 HARFLKLGLDSNPIVATRLLNAYLNSQVQNSLTYAYQLFEQVPHRNKDTTLWTSIISAFN 262
           H   LK   + +  V   LL+ Y      N +    ++FE++P    D   W+ +IS + 
Sbjct: 165 HGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVL---RVFEEMPKH--DVIPWSFMISRYA 219

Query: 261 KSGNSYNAIQLFSQMLHQ-TKPNHFIYATVVRACATSVAYLQLGKTIHSLVIKTGYSPNV 85
           +S  S  A++LF QM      PN F +A+V+++CA S+  LQLGK +H  V+K G   NV
Sbjct: 220 QSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA-SIENLQLGKQVHCHVLKVGLDGNV 278

Query: 84  VVETSLLDMYAKWGLVEFSRILFDEMP 4
            V  +L+D+YAK G ++ S  LF E+P
Sbjct: 279 FVSNALMDVYAKCGRLDNSMKLFMELP 305