BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028306
         (1022 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              79   4e-13
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    77   4e-13
emb|CAN70061.1| hypothetical protein VITISV_025665 [Vitis vinifera]    80   6e-13
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    77   7e-13
emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]    79   1e-12

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 79.3 bits (194), Expect(2) = 4e-13
 Identities = 38/80 (47%), Positives = 50/80 (62%)
 Frame = +2

Query: 737  IKRIIEVYIEDMVXXXXXXXXXXXXXXTIFRIFKEFNMKPNPEKCTFGVSSGKYLGYIVM 916
            I R +EVYI+DM+                F +   + MK NP KCTFGV+SG++LGY+V 
Sbjct: 970  IGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVT 1029

Query: 917  KRGINANPDQIRAL*QMSSP 976
            KRGI ANP QIRA+ ++ SP
Sbjct: 1030 KRGIEANPKQIRAILELPSP 1049



 Score = 21.9 bits (45), Expect(2) = 4e-13
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 988  KQIQRLTGRIA 1020
            +++QRLTGRIA
Sbjct: 1053 REVQRLTGRIA 1063


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 77.4 bits (189), Expect(2) = 4e-13
 Identities = 37/81 (45%), Positives = 49/81 (60%)
 Frame = +2

Query: 743 RIIEVYIEDMVXXXXXXXXXXXXXXTIFRIFKEFNMKPNPEKCTFGVSSGKYLGYIVMKR 922
           + +EVYI+DM+                F    ++NMK NP KC FGV+SG++LGYIV KR
Sbjct: 645 KTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKR 704

Query: 923 GINANPDQIRAL*QMSSPTTR 985
           GI ANP QIRA+  + SP  +
Sbjct: 705 GIEANPKQIRAILDLQSPRNK 725



 Score = 23.9 bits (50), Expect(2) = 4e-13
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 985  RKQIQRLTGRIA 1020
            +K++QRLTGRIA
Sbjct: 725  KKEVQRLTGRIA 736


>emb|CAN70061.1| hypothetical protein VITISV_025665 [Vitis vinifera]
          Length = 685

 Score = 80.5 bits (197), Expect = 6e-13
 Identities = 38/96 (39%), Positives = 60/96 (62%)
 Frame = +2

Query: 728  RKLIKRIIEVYIEDMVXXXXXXXXXXXXXXTIFRIFKEFNMKPNPEKCTFGVSSGKYLGY 907
            + L+ RI+EVYI+D+V               +F++ ++++MK NP KC FGVS+GK+LG+
Sbjct: 152  KPLVGRIVEVYIDDIVVKSKTREEHVLHLQEVFQLLRKYDMKLNPSKCAFGVSAGKFLGF 211

Query: 908  IVMKRGINANPDQIRAL*QMSSPTTRGNKSKD*LEG 1015
            +V +RGI  +PDQ++A+  M +P  R  K    L G
Sbjct: 212  MVSQRGIEVSPDQVKAV--METPPPRSKKELQRLTG 245


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 77.0 bits (188), Expect(2) = 7e-13
 Identities = 38/80 (47%), Positives = 48/80 (60%)
 Frame = +2

Query: 737 IKRIIEVYIEDMVXXXXXXXXXXXXXXTIFRIFKEFNMKPNPEKCTFGVSSGKYLGYIVM 916
           + + +EVYI+DM+                F I  ++ MK NP KCTFGV SG++LGYIV 
Sbjct: 610 VGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVT 669

Query: 917 KRGINANPDQIRAL*QMSSP 976
           KRGI ANP+QI A   M SP
Sbjct: 670 KRGIEANPNQINAFLNMPSP 689



 Score = 23.5 bits (49), Expect(2) = 7e-13
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 964  NVVTNNKRKQIQRLTGRIA 1020
            N+ +    K++QRLTGRIA
Sbjct: 685  NMPSPKNFKEVQRLTGRIA 703


>emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]
          Length = 622

 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 40/107 (37%), Positives = 63/107 (58%)
 Frame = +2

Query: 665 PISQRLVPMTQKFLGFSVFFSRKLIKRIIEVYIEDMVXXXXXXXXXXXXXXTIFRIFKEF 844
           P   + V  T + L   +F  + LI  ++EVYI+D+V               +F + +++
Sbjct: 24  PFGLKNVGATYQRLMTKIF--KPLIGDVVEVYIDDVVVKSKTRSEHTQHLQKVFHLLRKY 81

Query: 845 NMKPNPEKCTFGVSSGKYLGYIVMKRGINANPDQIRAL*QMSSPTTR 985
            MK NP KC FGVSSGK+LG++V +RGI  NP+Q++A+  M +PT +
Sbjct: 82  GMKLNPAKCAFGVSSGKFLGFMVTQRGIEINPNQVKAVANMLAPTNK 128