BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028294
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containi...   210   2e-52
ref|XP_002512079.1| pentatricopeptide repeat-containing protein,...   206   4e-51
ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|2...   204   1e-50
ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containi...   203   3e-50
ref|XP_003614163.1| Pentatricopeptide repeat-containing protein ...   195   6e-48

>ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
           [Vitis vinifera]
          Length = 655

 Score =  210 bits (535), Expect = 2e-52
 Identities = 98/116 (84%), Positives = 111/116 (95%)
 Frame = -2

Query: 677 YLTLINGYVTAEKYFSVLMLWTEVRKQVSVDSEKGLKLDHNLVDAFLYALIKGGFFDAVM 498
           YL+LINGY +AEKYFSVLMLW EV++++S+D EKG+K DHNLVDAFLYAL+KGGFFDAVM
Sbjct: 540 YLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGGFFDAVM 599

Query: 497 QVVEKTQEMKIFVDKWRYKQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 330
           QVVEK+QEMKIFVDKWRYKQAFME HKKLKVAK+RKRNFRKMEAL+AFKNWAGL+A
Sbjct: 600 QVVEKSQEMKIFVDKWRYKQAFMEVHKKLKVAKVRKRNFRKMEALIAFKNWAGLNA 655


>ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549259|gb|EEF50748.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 650

 Score =  206 bits (523), Expect = 4e-51
 Identities = 97/116 (83%), Positives = 110/116 (94%)
 Frame = -2

Query: 677 YLTLINGYVTAEKYFSVLMLWTEVRKQVSVDSEKGLKLDHNLVDAFLYALIKGGFFDAVM 498
           YL+LINGYVTAEKYFSVLMLW+E++++VS D EK  K D NLVDAFLYAL+KGGFFDAVM
Sbjct: 535 YLSLINGYVTAEKYFSVLMLWSEIKRRVSNDKEKSFKFDQNLVDAFLYALVKGGFFDAVM 594

Query: 497 QVVEKTQEMKIFVDKWRYKQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 330
           QVVEK+QEMKIFVDKW+YKQAFME+HKKLKV+KLRKRNFRKMEAL+AFKNWAGL+A
Sbjct: 595 QVVEKSQEMKIFVDKWKYKQAFMETHKKLKVSKLRKRNFRKMEALIAFKNWAGLNA 650


>ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1|
           predicted protein [Populus trichocarpa]
          Length = 654

 Score =  204 bits (519), Expect = 1e-50
 Identities = 96/115 (83%), Positives = 108/115 (93%)
 Frame = -2

Query: 677 YLTLINGYVTAEKYFSVLMLWTEVRKQVSVDSEKGLKLDHNLVDAFLYALIKGGFFDAVM 498
           YL+LINGYVTAEKYF VLMLW EV+++VS D EKG+K D +LVDAFLYA++KGGFFDAVM
Sbjct: 539 YLSLINGYVTAEKYFGVLMLWNEVKRKVSPDKEKGIKFDQSLVDAFLYAMVKGGFFDAVM 598

Query: 497 QVVEKTQEMKIFVDKWRYKQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLS 333
           QVVEK+QEMKIFVDKWRYKQAFMESHKKLKV+KLRKRNFRKMEAL+AFKNW GL+
Sbjct: 599 QVVEKSQEMKIFVDKWRYKQAFMESHKKLKVSKLRKRNFRKMEALIAFKNWVGLN 653


>ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Glycine max]
          Length = 624

 Score =  203 bits (516), Expect = 3e-50
 Identities = 93/116 (80%), Positives = 109/116 (93%)
 Frame = -2

Query: 677 YLTLINGYVTAEKYFSVLMLWTEVRKQVSVDSEKGLKLDHNLVDAFLYALIKGGFFDAVM 498
           YL++INGYV AEKYF VLMLW EV++++S+D +KG+K DHNLVDAFLYA++KGGFFDAVM
Sbjct: 509 YLSMINGYVLAEKYFLVLMLWNEVKRKLSLDGQKGIKFDHNLVDAFLYAMVKGGFFDAVM 568

Query: 497 QVVEKTQEMKIFVDKWRYKQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 330
           QVVEK  EM++FVDKWRYKQAFME+HKKLKVAKLRKRNFRKMEAL+AFKNWAGL+A
Sbjct: 569 QVVEKAYEMRVFVDKWRYKQAFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA 624


>ref|XP_003614163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355515498|gb|AES97121.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 660

 Score =  195 bits (496), Expect = 6e-48
 Identities = 90/116 (77%), Positives = 108/116 (93%)
 Frame = -2

Query: 677 YLTLINGYVTAEKYFSVLMLWTEVRKQVSVDSEKGLKLDHNLVDAFLYALIKGGFFDAVM 498
           YL+LINGYV+AEKYF V+MLW EV+++++ D  KG+K D NLVDAFLYA++KGGFFDAVM
Sbjct: 545 YLSLINGYVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVM 604

Query: 497 QVVEKTQEMKIFVDKWRYKQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 330
           QVVEK++EMKIFVDKWRYKQAFME+HKKLKVA+LRK+N RKMEAL+AFKNWAGL+A
Sbjct: 605 QVVEKSKEMKIFVDKWRYKQAFMETHKKLKVARLRKKNVRKMEALIAFKNWAGLNA 660