BLASTX nr result
ID: Coptis25_contig00028259
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028259 (282 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 86 4e-15 gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi... 81 8e-14 gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 80 2e-13 gb|ABA27027.1| TO70-3 [Taraxacum officinale] 80 2e-13 gb|AFU25705.1| gag-pol precursor [Castanea mollissima] 80 2e-13 >gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] Length = 1103 Score = 85.5 bits (210), Expect = 4e-15 Identities = 39/87 (44%), Positives = 55/87 (63%) Frame = +2 Query: 5 IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184 IR++ Y + R YN +V+ R F VGD VLRRV + K+ GKLG+ WEGPY + ++ Sbjct: 1016 IRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVR 1075 Query: 185 AGTYRLRTQEGKLIEKPWNVRMLNKFH 265 G YRL+ E +++PWNV L KF+ Sbjct: 1076 NGVYRLKDLEDNPVKRPWNVINLKKFY 1102 >gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1329 Score = 81.3 bits (199), Expect = 8e-14 Identities = 37/86 (43%), Positives = 50/86 (58%) Frame = +2 Query: 8 RLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGGA 187 R++ YH R YN VR R F+VG VLRRV + + GKLG++WEGPY + + Sbjct: 1243 RMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRN 1302 Query: 188 GTYRLRTQEGKLIEKPWNVRMLNKFH 265 G YRL EGK + + WN L +F+ Sbjct: 1303 GVYRLINMEGKTVRRAWNSMHLKRFY 1328 >gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1466 Score = 80.1 bits (196), Expect = 2e-13 Identities = 38/88 (43%), Positives = 54/88 (61%) Frame = +2 Query: 5 IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184 I+++ Y R YN +V+ R F VGD VL+RV + K+ GKLG+ WEGPY V ++ Sbjct: 1199 IQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVR 1258 Query: 185 AGTYRLRTQEGKLIEKPWNVRMLNKFHT 268 G YRL+ E + +++PWNV N HT Sbjct: 1259 NGVYRLKDLEDRPVQRPWNV---NGHHT 1283 >gb|ABA27027.1| TO70-3 [Taraxacum officinale] Length = 97 Score = 79.7 bits (195), Expect = 2e-13 Identities = 34/80 (42%), Positives = 50/80 (62%) Frame = +2 Query: 2 RIRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIG 181 R+R+ + +R+ YNK +R+RRF++GD VLR+ +TK ++GKL WEGPY + Sbjct: 14 RLRIAAHQQRIANSYNKNIRIRRFQIGDLVLRKTFQNTKDPADGKLAPKWEGPYVINSKA 73 Query: 182 GAGTYRLRTQEGKLIEKPWN 241 G G Y L EG L+ + WN Sbjct: 74 GKGVYWLADMEGTLLPRSWN 93 >gb|AFU25705.1| gag-pol precursor [Castanea mollissima] Length = 1106 Score = 79.7 bits (195), Expect = 2e-13 Identities = 32/87 (36%), Positives = 55/87 (63%) Frame = +2 Query: 5 IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184 +++ Y ++L++ Y+K V+ R GD VLR+V + + + GKLG WEGPY + + G Sbjct: 1019 VKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPYRITSVAG 1078 Query: 185 AGTYRLRTQEGKLIEKPWNVRMLNKFH 265 G YRL +G+++ +PWNV L +++ Sbjct: 1079 IGAYRLEDLDGRVVHRPWNVNNLRRYY 1105