BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028259
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              86   4e-15
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi...    81   8e-14
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    80   2e-13
gb|ABA27027.1| TO70-3 [Taraxacum officinale]                           80   2e-13
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                 80   2e-13

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 39/87 (44%), Positives = 55/87 (63%)
 Frame = +2

Query: 5    IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184
            IR++ Y +   R YN +V+ R F VGD VLRRV  + K+   GKLG+ WEGPY + ++  
Sbjct: 1016 IRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVR 1075

Query: 185  AGTYRLRTQEGKLIEKPWNVRMLNKFH 265
             G YRL+  E   +++PWNV  L KF+
Sbjct: 1076 NGVYRLKDLEDNPVKRPWNVINLKKFY 1102


>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1329

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 37/86 (43%), Positives = 50/86 (58%)
 Frame = +2

Query: 8    RLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGGA 187
            R++ YH    R YN  VR R F+VG  VLRRV  +  +   GKLG++WEGPY +  +   
Sbjct: 1243 RMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRN 1302

Query: 188  GTYRLRTQEGKLIEKPWNVRMLNKFH 265
            G YRL   EGK + + WN   L +F+
Sbjct: 1303 GVYRLINMEGKTVRRAWNSMHLKRFY 1328


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 38/88 (43%), Positives = 54/88 (61%)
 Frame = +2

Query: 5    IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184
            I+++ Y     R YN +V+ R F VGD VL+RV  + K+   GKLG+ WEGPY V ++  
Sbjct: 1199 IQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVR 1258

Query: 185  AGTYRLRTQEGKLIEKPWNVRMLNKFHT 268
             G YRL+  E + +++PWNV   N  HT
Sbjct: 1259 NGVYRLKDLEDRPVQRPWNV---NGHHT 1283


>gb|ABA27027.1| TO70-3 [Taraxacum officinale]
          Length = 97

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 34/80 (42%), Positives = 50/80 (62%)
 Frame = +2

Query: 2   RIRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIG 181
           R+R+  + +R+   YNK +R+RRF++GD VLR+   +TK  ++GKL   WEGPY +    
Sbjct: 14  RLRIAAHQQRIANSYNKNIRIRRFQIGDLVLRKTFQNTKDPADGKLAPKWEGPYVINSKA 73

Query: 182 GAGTYRLRTQEGKLIEKPWN 241
           G G Y L   EG L+ + WN
Sbjct: 74  GKGVYWLADMEGTLLPRSWN 93


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 32/87 (36%), Positives = 55/87 (63%)
 Frame = +2

Query: 5    IRLEEYHRRLQRQYNKRVRLRRFKVGDQVLRRVNPSTKKMSEGKLGLTWEGPYTVVDIGG 184
            +++  Y ++L++ Y+K V+ R    GD VLR+V  + +  + GKLG  WEGPY +  + G
Sbjct: 1019 VKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPYRITSVAG 1078

Query: 185  AGTYRLRTQEGKLIEKPWNVRMLNKFH 265
             G YRL   +G+++ +PWNV  L +++
Sbjct: 1079 IGAYRLEDLDGRVVHRPWNVNNLRRYY 1105