BLASTX nr result
ID: Coptis25_contig00028244
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028244
(874 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004139751.1| PREDICTED: F-box/kelch-repeat protein At3g23... 65 1e-10
ref|XP_004171022.1| PREDICTED: F-box/kelch-repeat protein At3g23... 65 1e-10
ref|XP_002282067.1| PREDICTED: F-box protein At3g07870-like [Vit... 64 5e-08
dbj|BAD37944.1| hypothetical protein [Oryza sativa Japonica Grou... 63 1e-07
gb|EEE69821.1| hypothetical protein OsJ_29568 [Oryza sativa Japo... 63 1e-07
>ref|XP_004139751.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis
sativus]
Length = 401
Score = 65.5 bits (158), Expect(2) = 1e-10
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Frame = +3
Query: 48 FYCKDWYNLLSSPRFINAHLLQSKPGLIVTP-------------------FSNTIPIGVG 170
F CK W+N++ SP F+ H +S+ LI T SNT+ I
Sbjct: 50 FVCKHWFNIICSPTFVETHFHRSESVLIFTAPTRYEETSHHLTPSLPHSGKSNTLSIEAK 109
Query: 171 TRYTHPDV----------------IQINDREINVCSLGLKCEKFVESACNGLVLLED--L 296
+ + ++ D NV L C + + CNGL+LL++
Sbjct: 110 YMQSSESLSLFHNLEPTSKRFIQFLEFQDGISNVGEYSLSCFGQIRATCNGLILLDNKLK 169
Query: 297 ESNLWVCNPVIGQILTLPPCIRRTGTLNIKR----GITFIESTGMYKVVSVVYDRNTGLL 464
L V NPV ++ LPP GTLN G + +G YKVV + D +
Sbjct: 170 IGGLIVINPVTRKLTALPP-----GTLNSSHNESYGFAYDNISGRYKVVHLFRDA-LMYI 223
Query: 465 GCEVHVLGSNTWKWIS*P 518
CE+ +LG+ W+ + P
Sbjct: 224 SCEIFILGTENWRAVDGP 241
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 602 CIRGFFFE-DKFYRSELPHWCIG-EQLLEIDGFLSFVGPKLYNTC*WNIWALTDLDSWKW 775
CI E +KF LP+ C + ++EI LS+V +T +IW L L W
Sbjct: 271 CIASLEIENEKFQTIPLPNSCNRYDGIVEIGSSLSYVTHMETHT---DIWILKGLSGEIW 327
Query: 776 DMRYSINV 799
++SIN+
Sbjct: 328 IKQHSINI 335
>ref|XP_004171022.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis
sativus]
Length = 390
Score = 65.5 bits (158), Expect(2) = 1e-10
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Frame = +3
Query: 48 FYCKDWYNLLSSPRFINAHLLQSKPGLIVTP-------------------FSNTIPIGVG 170
F CK W+N++ SP F+ H +S+ LI T SNT+ I
Sbjct: 50 FVCKHWFNIICSPTFVETHFHRSESVLIFTAPTRYEETSHHLTPSLPHSGKSNTLSIEAK 109
Query: 171 TRYTHPDV----------------IQINDREINVCSLGLKCEKFVESACNGLVLLED--L 296
+ + ++ D NV L C + + CNGL+LL++
Sbjct: 110 YMQSSESLSLFHNLEPTSKRFIQFLEFQDGISNVGEYSLSCFGQIRATCNGLILLDNKLK 169
Query: 297 ESNLWVCNPVIGQILTLPPCIRRTGTLNIKR----GITFIESTGMYKVVSVVYDRNTGLL 464
L V NPV ++ LPP GTLN G + +G YKVV + D +
Sbjct: 170 IGGLIVINPVTRKLTALPP-----GTLNSSHNESYGFAYDNVSGRYKVVHLFRDA-LMYI 223
Query: 465 GCEVHVLGSNTWKWIS*P 518
CE+ +LG+ W+ + P
Sbjct: 224 SCEIFILGTENWRAVDGP 241
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 602 CIRGFFFE-DKFYRSELPHWCIG-EQLLEIDGFLSFVGPKLYNTC*WNIWALTDLDSWKW 775
CI E +KF LP+ C + ++EI LS+V +T +IW L L W
Sbjct: 271 CIASLEIENEKFQTIPLPNSCNRYDGIVEIGSSLSYVTHMETHT---DIWILKGLSGEIW 327
Query: 776 DMRYSINV 799
++SIN+
Sbjct: 328 IKQHSINI 335
>ref|XP_002282067.1| PREDICTED: F-box protein At3g07870-like [Vitis vinifera]
Length = 417
Score = 63.9 bits (154), Expect = 5e-08
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 43/214 (20%)
Frame = +3
Query: 6 IFTGLHAREVQKFRFYCKDWYNLLSSPRFINAHLLQSKPGLI-----------VTPFS-- 146
I L + R CK WY L++SP FI+AHL +S+ LI + PFS
Sbjct: 42 ILVRLPIESLPSSRLVCKPWYKLINSPIFIDAHLRRSEVVLIFLTPIVKQETYLYPFSTR 101
Query: 147 -------NTIPIGV------GTRYTHPDVI-----------QINDREINVCSLGLKCEKF 254
NT + V T H VI +I D + + + C
Sbjct: 102 SISQEKPNTFSVEVNLLQLESTPLFHQPVIDPRRKSYIQFMEIKDGKSKIGEFNISCMGE 161
Query: 255 VESACNGLVLLED--LESNLWVCNPVIGQILTLPPCIRRTGTLNIKR----GITFIESTG 416
+ ++ NGL+LLE+ L V NPV ++ LP GTL+ G ST
Sbjct: 162 ITASFNGLILLENKLKRGRLVVMNPVTRKLTELP-----LGTLSQPHQESYGFALSYSTS 216
Query: 417 MYKVVSVVYDRNTGLLGCEVHVLGSNTWKWIS*P 518
YKVV + +D + CE+ +G+ TW+ ++ P
Sbjct: 217 EYKVVHLFHD-ELRYINCEILNVGTRTWRPVNGP 249
>dbj|BAD37944.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51536112|dbj|BAD38236.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 371
Score = 62.8 bits (151), Expect = 1e-07
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Frame = +3
Query: 6 IFTGLHAREVQKFRFYCKDWYNLLSSPRFINAHLLQSK--PGLIVTPFS--------NTI 155
I + L ++ + +FR CK W+ +SS RF+NAHL SK P L+V P S N
Sbjct: 44 ILSWLPSKSLIRFRSVCKAWHATISSSRFVNAHLECSKQRPSLLVIPGSFEMKKNGENIA 103
Query: 156 PIGVGTRYTHPDVIQINDREINVCSLGLKCEKFVESA-CNGLVLLEDLESNLWVCNPVIG 332
+ +Y P+++ + D + K++ C+GL+L+ + + +CNP
Sbjct: 104 FLMSLYKYQDPNIMHLQDFPRGI-------RKWIRPVHCDGLLLISTRKHKMMICNPSTR 156
Query: 333 QILTLPPCIRR-TGTLNIKRGITFIESTGMYKVVSVVYDRN--TGLLGC--EVHVLGSNT 497
+I++LP G + + G F + YKV Y R+ T C EV LG++
Sbjct: 157 EIVSLPEGSHSLCGGMGL--GFGFDPHSNKYKVARAFYQRDYPTTRQVCKFEVLTLGTDA 214
Query: 498 WK 503
W+
Sbjct: 215 WR 216
>gb|EEE69821.1| hypothetical protein OsJ_29568 [Oryza sativa Japonica Group]
Length = 293
Score = 62.8 bits (151), Expect = 1e-07
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Frame = +3
Query: 6 IFTGLHAREVQKFRFYCKDWYNLLSSPRFINAHLLQSK--PGLIVTPFS--------NTI 155
I + L ++ + +FR CK W+ +SS RF+NAHL SK P L+V P S N
Sbjct: 44 ILSWLPSKSLIRFRSVCKAWHATISSSRFVNAHLECSKQRPSLLVIPGSFEMKKNGENIA 103
Query: 156 PIGVGTRYTHPDVIQINDREINVCSLGLKCEKFVESA-CNGLVLLEDLESNLWVCNPVIG 332
+ +Y P+++ + D + K++ C+GL+L+ + + +CNP
Sbjct: 104 FLMSLYKYQDPNIMHLQDFPRGI-------RKWIRPVHCDGLLLISTRKHKMMICNPSTR 156
Query: 333 QILTLPPCIRR-TGTLNIKRGITFIESTGMYKVVSVVYDRN--TGLLGC--EVHVLGSNT 497
+I++LP G + + G F + YKV Y R+ T C EV LG++
Sbjct: 157 EIVSLPEGSHSLCGGMGL--GFGFDPHSNKYKVARAFYQRDYPTTRQVCKFEVLTLGTDA 214
Query: 498 WK 503
W+
Sbjct: 215 WR 216