BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028229
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata sub...    59   5e-07
ref|XP_003527977.1| PREDICTED: F-box/kelch-repeat protein At3g06...    58   7e-07
ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ...    58   9e-07
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    57   2e-06

>ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|222847413|gb|EEE84960.1|
           predicted protein [Populus trichocarpa]
          Length = 364

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +3

Query: 6   FNMGFAYNSIEKDY-VVVRLVVTARFQN-LCEVEIYSLRDNSWTRIQNISHTICRDNKGV 179
           F  G  Y+S   DY +V+  + TA   + +   E+++L+ NSW RIQ I   I  +    
Sbjct: 148 FLTGLGYDSTIDDYKLVIACLTTANGSHQIMAPEVFTLKTNSWRRIQGIHSGITLEGGAG 207

Query: 180 VFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREF 299
           VF+ GALHWLG Q+    G     D+I +LDV  +KF  F
Sbjct: 208 VFWNGALHWLGKQET---GADHDVDVIFSLDVAQEKFMGF 244


>ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328297|gb|EFH58716.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 427

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
 Frame = +3

Query: 15  GFAYNSIEKDYVVVRLVVTARFQNLCEVEIYSLRDNSWTRIQNISHTICRDNKGV----V 182
           GF ++ +  DY VV+LV T+   ++ +  +YSL+ +SW RI N+++     N G     V
Sbjct: 215 GFGFDDLTDDYKVVKLVATS--DDILDASVYSLKADSWRRICNLNY---EHNDGFYTSGV 269

Query: 183 FFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP----QCEH 320
            F GA+HW+      +  I     +++A D+ +++FRE  LP     C H
Sbjct: 270 HFNGAIHWV------FAEISHGQRVVVAFDIQTEEFREMPLPVEAEDCHH 313


>ref|XP_003527977.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max]
          Length = 376

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
 Frame = +3

Query: 3   TFNMGFAYNSIEKDYVVVRLVVT--ARFQNLCEVEIYSLRDNSWTRIQNISHTICRDNKG 176
           TF  GF Y+S   DY+VV+   +  +R+      E  SLR N+WT I+    +    ++G
Sbjct: 158 TFLYGFGYDSSTDDYLVVKASYSPISRYNATTRFEFLSLRANAWTDIEAAHLSYMNSSQG 217

Query: 177 V---VFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP 308
           +   +F  GA+HWL           V  D+++A D+T + F E  LP
Sbjct: 218 IGAGLFLNGAIHWL------VFCCDVSLDVVVAFDLTERSFSEIPLP 258


>ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 414

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = +3

Query: 15  GFAYNSIEKDYVVVRLVVTARF---QNLCEVEIYSLRDNSWTRIQNISHTICRDNKGVVF 185
           GF  +S+  DY V+RL     F   Q   +  +YSL+ NSW +I  +S  I  D K  V 
Sbjct: 149 GFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRKIDGMSCIIGFDQKMGVL 208

Query: 186 FVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP 308
              ALHWL  +D     I + PD+I+AL++  + FRE   P
Sbjct: 209 VGEALHWLASRD----RILLNPDVIVALNLGVEDFREVPGP 245


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
 Frame = +3

Query: 15  GFAYNSIEKDYVVVRLVVTARFQNL------CEVEIYSLRDNSWTRIQNISHTICRDNKG 176
           GF Y+    DY +VR+   A+F  +       EV+++SLR NSW RI ++ + +    + 
Sbjct: 143 GFGYDLSNDDYKLVRI---AQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGEN 199

Query: 177 VVFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLPQCEHIN 326
            ++  GALHWL  QD D      + D I+ALD+  + +     P+   +N
Sbjct: 200 GIYANGALHWLVSQDPD----STVADTIVALDLGVEDYHVVPKPEFVDMN 245