BLASTX nr result
ID: Coptis25_contig00028229
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028229 (385 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|2... 61 1e-07 ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata sub... 59 5e-07 ref|XP_003527977.1| PREDICTED: F-box/kelch-repeat protein At3g06... 58 7e-07 ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ... 58 9e-07 ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 57 2e-06 >ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|222847413|gb|EEE84960.1| predicted protein [Populus trichocarpa] Length = 364 Score = 60.8 bits (146), Expect = 1e-07 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Frame = +3 Query: 6 FNMGFAYNSIEKDY-VVVRLVVTARFQN-LCEVEIYSLRDNSWTRIQNISHTICRDNKGV 179 F G Y+S DY +V+ + TA + + E+++L+ NSW RIQ I I + Sbjct: 148 FLTGLGYDSTIDDYKLVIACLTTANGSHQIMAPEVFTLKTNSWRRIQGIHSGITLEGGAG 207 Query: 180 VFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREF 299 VF+ GALHWLG Q+ G D+I +LDV +KF F Sbjct: 208 VFWNGALHWLGKQET---GADHDVDVIFSLDVAQEKFMGF 244 >ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328297|gb|EFH58716.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Length = 427 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 8/110 (7%) Frame = +3 Query: 15 GFAYNSIEKDYVVVRLVVTARFQNLCEVEIYSLRDNSWTRIQNISHTICRDNKGV----V 182 GF ++ + DY VV+LV T+ ++ + +YSL+ +SW RI N+++ N G V Sbjct: 215 GFGFDDLTDDYKVVKLVATS--DDILDASVYSLKADSWRRICNLNY---EHNDGFYTSGV 269 Query: 183 FFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP----QCEH 320 F GA+HW+ + I +++A D+ +++FRE LP C H Sbjct: 270 HFNGAIHWV------FAEISHGQRVVVAFDIQTEEFREMPLPVEAEDCHH 313 >ref|XP_003527977.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] Length = 376 Score = 58.2 bits (139), Expect = 7e-07 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Frame = +3 Query: 3 TFNMGFAYNSIEKDYVVVRLVVT--ARFQNLCEVEIYSLRDNSWTRIQNISHTICRDNKG 176 TF GF Y+S DY+VV+ + +R+ E SLR N+WT I+ + ++G Sbjct: 158 TFLYGFGYDSSTDDYLVVKASYSPISRYNATTRFEFLSLRANAWTDIEAAHLSYMNSSQG 217 Query: 177 V---VFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP 308 + +F GA+HWL V D+++A D+T + F E LP Sbjct: 218 IGAGLFLNGAIHWL------VFCCDVSLDVVVAFDLTERSFSEIPLP 258 >ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 414 Score = 57.8 bits (138), Expect = 9e-07 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Frame = +3 Query: 15 GFAYNSIEKDYVVVRLVVTARF---QNLCEVEIYSLRDNSWTRIQNISHTICRDNKGVVF 185 GF +S+ DY V+RL F Q + +YSL+ NSW +I +S I D K V Sbjct: 149 GFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRKIDGMSCIIGFDQKMGVL 208 Query: 186 FVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLP 308 ALHWL +D I + PD+I+AL++ + FRE P Sbjct: 209 VGEALHWLASRD----RILLNPDVIVALNLGVEDFREVPGP 245 >ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 389 Score = 56.6 bits (135), Expect = 2e-06 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Frame = +3 Query: 15 GFAYNSIEKDYVVVRLVVTARFQNL------CEVEIYSLRDNSWTRIQNISHTICRDNKG 176 GF Y+ DY +VR+ A+F + EV+++SLR NSW RI ++ + + + Sbjct: 143 GFGYDLSNDDYKLVRI---AQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGEN 199 Query: 177 VVFFVGALHWLGVQDVDYLGIKVMPDIIIALDVTSKKFREFQLPQCEHIN 326 ++ GALHWL QD D + D I+ALD+ + + P+ +N Sbjct: 200 GIYANGALHWLVSQDPD----STVADTIVALDLGVEDYHVVPKPEFVDMN 245