BLASTX nr result
ID: Coptis25_contig00028213
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028213 (258 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002301364.1| chromatin remodeling complex subunit [Populu... 70 6e-16 ref|XP_002276245.2| PREDICTED: ATP-dependent helicase BRM-like [... 70 1e-15 ref|XP_004155832.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependen... 70 1e-15 ref|XP_002511882.1| Chromo domain protein, putative [Ricinus com... 70 1e-15 ref|XP_004133860.1| PREDICTED: ATP-dependent helicase BRM-like [... 70 1e-15 >ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa] Length = 2222 Score = 70.1 bits (170), Expect(2) = 6e-16 Identities = 33/37 (89%), Positives = 34/37 (91%) Frame = -3 Query: 256 GLAKTVQAMALIAYLMEFKGNFGLHLIIVPNAVLVNW 146 GL KTVQ MALIAYLMEFKGN+G HLIIVPNAVLVNW Sbjct: 1014 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1050 Score = 38.5 bits (88), Expect(2) = 6e-16 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = -1 Query: 54 QSELDSWLPSVSCIYYVG 1 +SEL SWLPSVSCIYYVG Sbjct: 1051 KSELHSWLPSVSCIYYVG 1068 >ref|XP_002276245.2| PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera] Length = 2263 Score = 70.1 bits (170), Expect(2) = 1e-15 Identities = 33/37 (89%), Positives = 34/37 (91%) Frame = -3 Query: 256 GLAKTVQAMALIAYLMEFKGNFGLHLIIVPNAVLVNW 146 GL KTVQ MALIAYLMEFKGN+G HLIIVPNAVLVNW Sbjct: 1041 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1077 Score = 37.4 bits (85), Expect(2) = 1e-15 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 54 QSELDSWLPSVSCIYYVG 1 +SEL +WLPSVSCIYYVG Sbjct: 1078 KSELHNWLPSVSCIYYVG 1095 >ref|XP_004155832.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase BRM-like [Cucumis sativus] Length = 2251 Score = 70.1 bits (170), Expect(2) = 1e-15 Identities = 33/37 (89%), Positives = 34/37 (91%) Frame = -3 Query: 256 GLAKTVQAMALIAYLMEFKGNFGLHLIIVPNAVLVNW 146 GL KTVQ MALIAYLMEFKGN+G HLIIVPNAVLVNW Sbjct: 1038 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1074 Score = 37.4 bits (85), Expect(2) = 1e-15 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 54 QSELDSWLPSVSCIYYVG 1 +SEL +WLPSVSCIYYVG Sbjct: 1075 KSELHTWLPSVSCIYYVG 1092 >ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis] gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis] Length = 2248 Score = 70.1 bits (170), Expect(2) = 1e-15 Identities = 33/37 (89%), Positives = 34/37 (91%) Frame = -3 Query: 256 GLAKTVQAMALIAYLMEFKGNFGLHLIIVPNAVLVNW 146 GL KTVQ MALIAYLMEFKGN+G HLIIVPNAVLVNW Sbjct: 1035 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1071 Score = 37.4 bits (85), Expect(2) = 1e-15 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 54 QSELDSWLPSVSCIYYVG 1 +SEL +WLPSVSCIYYVG Sbjct: 1072 KSELHNWLPSVSCIYYVG 1089 >ref|XP_004133860.1| PREDICTED: ATP-dependent helicase BRM-like [Cucumis sativus] Length = 2247 Score = 70.1 bits (170), Expect(2) = 1e-15 Identities = 33/37 (89%), Positives = 34/37 (91%) Frame = -3 Query: 256 GLAKTVQAMALIAYLMEFKGNFGLHLIIVPNAVLVNW 146 GL KTVQ MALIAYLMEFKGN+G HLIIVPNAVLVNW Sbjct: 1034 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1070 Score = 37.4 bits (85), Expect(2) = 1e-15 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 54 QSELDSWLPSVSCIYYVG 1 +SEL +WLPSVSCIYYVG Sbjct: 1071 KSELHTWLPSVSCIYYVG 1088