BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028133
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090397.1| cytochrome c biogenesis C (mitochondrion) [P...   120   1e-25
ref|YP_004237264.1| cytochrome c biogenesis C (mitochondrion) [R...   115   4e-24
ref|YP_002608188.1| cytochrome c biogenesis C [Carica papaya] gi...   115   4e-24
ref|YP_588332.1| cytochrome c biogenesis C [Zea mays subsp. mays...   115   5e-24
ref|YP_398410.1| orf240 [Triticum aestivum] gi|89280736|ref|YP_5...   115   5e-24

>ref|YP_005090397.1| cytochrome c biogenesis C (mitochondrion) [Phoenix dactylifera]
           gi|343478449|gb|AEM43937.1| cytochrome c biogenesis C
           (mitochondrion) [Phoenix dactylifera]
          Length = 240

 Score =  120 bits (301), Expect = 1e-25
 Identities = 60/62 (96%), Positives = 62/62 (100%)
 Frame = -2

Query: 186 MSVSLLQPSFFMSKTRSYAQILIGSRLFLTAMAIHLSLQVAPPDLQQGGNSRIPYVHVPA 7
           MSVSLLQPSFFMSKT+SYAQILIGSRLFLTAMAIHLSL+VAPPDLQQGGNSRIPYVHVPA
Sbjct: 1   MSVSLLQPSFFMSKTKSYAQILIGSRLFLTAMAIHLSLRVAPPDLQQGGNSRIPYVHVPA 60

Query: 6   AR 1
           AR
Sbjct: 61  AR 62


>ref|YP_004237264.1| cytochrome c biogenesis C (mitochondrion) [Ricinus communis]
           gi|322394271|gb|ADW96028.1| cytochrome c biogenesis C
           (mitochondrion) [Ricinus communis]
          Length = 232

 Score =  115 bits (288), Expect = 4e-24
 Identities = 59/62 (95%), Positives = 60/62 (96%)
 Frame = -2

Query: 186 MSVSLLQPSFFMSKTRSYAQILIGSRLFLTAMAIHLSLQVAPPDLQQGGNSRIPYVHVPA 7
           MSVSLLQPSF MSKTRSYAQILIGSRLFLTAMAIHLSL+VAP DLQQGGNSRIPYVHVPA
Sbjct: 1   MSVSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRIPYVHVPA 60

Query: 6   AR 1
           AR
Sbjct: 61  AR 62


>ref|YP_002608188.1| cytochrome c biogenesis C [Carica papaya]
           gi|170522367|gb|ACB20477.1| cytochrome c biogenesis C
           (mitochondrion) [Carica papaya]
          Length = 242

 Score =  115 bits (288), Expect = 4e-24
 Identities = 59/62 (95%), Positives = 60/62 (96%)
 Frame = -2

Query: 186 MSVSLLQPSFFMSKTRSYAQILIGSRLFLTAMAIHLSLQVAPPDLQQGGNSRIPYVHVPA 7
           MSVSLLQPSF MSKTRSYAQILIGSRLFLTAMAIHLSL+VAP DLQQGGNSRIPYVHVPA
Sbjct: 1   MSVSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRIPYVHVPA 60

Query: 6   AR 1
           AR
Sbjct: 61  AR 62


>ref|YP_588332.1| cytochrome c biogenesis C [Zea mays subsp. mays]
           gi|114151564|ref|YP_740369.1| cytochrome c biogenesis C
           [Zea perennis] gi|114151597|ref|YP_740427.1| cytochrome
           c biogenesis C [Zea luxurians]
           gi|114151630|ref|YP_740382.1| cytochrome c biogenesis C
           [Zea mays subsp. parviglumis]
           gi|115278532|ref|YP_762341.1| cytochrome c biogenesis C
           [Sorghum bicolor] gi|115278602|ref|YP_762483.1|
           cytochrome c biogenesis C [Tripsacum dactyloides]
           gi|40795020|gb|AAR91064.1| cytochrome c biogenesis C
           (mitochondrion) [Zea mays] gi|93116040|gb|ABE98673.1|
           cytochrome c biogenesis C (mitochondrion) [Zea mays
           subsp. mays] gi|93116084|gb|ABE98716.1| cytochrome c
           biogenesis C (mitochondrion) [Zea mays subsp. mays]
           gi|93116129|gb|ABE98760.1| cytochrome c biogenesis C
           [Zea mays subsp. mays] gi|102567898|gb|ABF70815.1|
           cytochrome c biogenesis C (mitochondrion) [Zea perennis]
           gi|102567963|gb|ABF70847.1| cytochrome c biogenesis C
           (mitochondrion) [Zea mays subsp. parviglumis]
           gi|102579633|gb|ABF70913.1| cytochrome c biogenesis C
           (mitochondrion) [Zea mays subsp. mays]
           gi|110287593|gb|ABG65639.1| cytochrome c biogenesis C
           (mitochondrion) [Zea luxurians]
           gi|114309653|gb|ABI60870.1| cytochrome c biogenesis C
           (mitochondrion) [Sorghum bicolor]
           gi|114432093|gb|ABI74642.1| cytochrome c biogenesis C
           (mitochondrion) [Tripsacum dactyloides]
           gi|413954246|gb|AFW86895.1| cytochrome c biogenesis [Zea
           mays] gi|414591720|tpg|DAA42291.1| TPA: cytochrome c
           biogenesis [Zea mays]
          Length = 240

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/62 (93%), Positives = 60/62 (96%)
 Frame = -2

Query: 186 MSVSLLQPSFFMSKTRSYAQILIGSRLFLTAMAIHLSLQVAPPDLQQGGNSRIPYVHVPA 7
           MSVSLLQP FFMSKT+SYAQILIGSRLFLTAMAIHLSL+VAPPDLQQGGNSRI YVHVPA
Sbjct: 1   MSVSLLQPYFFMSKTKSYAQILIGSRLFLTAMAIHLSLRVAPPDLQQGGNSRISYVHVPA 60

Query: 6   AR 1
           AR
Sbjct: 61  AR 62


>ref|YP_398410.1| orf240 [Triticum aestivum] gi|89280736|ref|YP_514640.1| cytochrome
           c biogenesis C [Oryza sativa Indica Group]
           gi|289065048|ref|YP_003433859.1| cytochrome c biogenesis
           C [Oryza rufipogon] gi|499014|emb|CAA56116.1| putative
           heme ABC transporter membrane domain [Triticum aestivum]
           gi|1395188|dbj|BAA10942.1| ABC-type heme transporter
           subunit [Oryza sativa Japonica Group]
           gi|74100103|gb|AAZ99267.1| cytochrome c biogenesis C
           (mitochondrion) [Oryza sativa Indica Group]
           gi|74100158|gb|AAZ99321.1| cytochrome c biogenesis C
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100212|gb|AAZ99374.1| cytochrome c biogenesis C
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|78675249|dbj|BAE47674.1| ccmC [Triticum aestivum]
           gi|164422242|gb|ABY55215.1| CcmC [Bambusa oldhamii]
           gi|169649081|gb|ACA62642.1| ccmC [Triticum aestivum]
           gi|285026130|dbj|BAI67963.1| cytochrome c biogenesis C
           [Oryza rufipogon] gi|285026160|dbj|BAI67992.1|
           cytochrome c biogenesis C [Oryza sativa Indica Group]
           gi|291498639|gb|ADE08113.1| ccmC-1 [Triticum aestivum]
           gi|291498640|gb|ADE08114.1| ccmC-2 [Triticum aestivum]
           gi|340748014|gb|AEK66731.1| cytochrome c biogenesis C
           [Ferrocalamus rimosivaginus] gi|353685236|gb|AER12999.1|
           cytochrome c biogenesis C (mitochondrion) [Oryza sativa
           Indica Group] gi|353685303|gb|AER13065.1| cytochrome c
           biogenesis C (mitochondrion) [Oryza sativa Indica Group]
           gi|372861932|gb|AEX98085.1| cytochrome c biogenesis C
           (mitochondrion) [Ferrocalamus rimosivaginus]
           gi|374277644|gb|AEZ03750.1| cytochrome c biogenesis C
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277688|gb|AEZ03793.1| cytochrome c biogenesis C
           (mitochondrion) [Oryza sativa Indica Group]
          Length = 240

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/62 (93%), Positives = 60/62 (96%)
 Frame = -2

Query: 186 MSVSLLQPSFFMSKTRSYAQILIGSRLFLTAMAIHLSLQVAPPDLQQGGNSRIPYVHVPA 7
           MSVSLLQP FFMSKT+SYAQILIGSRLFLTAMAIHLSL+VAPPDLQQGGNSRI YVHVPA
Sbjct: 1   MSVSLLQPYFFMSKTKSYAQILIGSRLFLTAMAIHLSLRVAPPDLQQGGNSRISYVHVPA 60

Query: 6   AR 1
           AR
Sbjct: 61  AR 62