BLASTX nr result
ID: Coptis25_contig00028126
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028126
(447 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|2... 100 1e-19
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,... 98 6e-19
ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi... 91 8e-17
ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar... 81 1e-13
ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containi... 78 7e-13
>ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|222865491|gb|EEF02622.1|
predicted protein [Populus trichocarpa]
Length = 707
Score = 100 bits (250), Expect = 1e-19
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Frame = -2
Query: 446 NSRIICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWE 267
NS I+ +EG + E L +DM+ K ++P + TYS LI+GHC KDF+GAYVW R+M E
Sbjct: 595 NSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLE 654
Query: 266 KGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGVAKHTVSDDLSAAAMM 111
GF+P+ I NEL TGL+ G LQ+A+ + +E+ G+ ++DLS A M
Sbjct: 655 NGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNEDLSDVAKM 707
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
C+E +++A LF +M V+ ++P+ VT++TLI+G+CKA + A +M ++ PS
Sbjct: 112 CKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSI 171
Query: 245 NIYNELMTGLQNGGMLQQAE-VLNEL 171
+N L++GL +++A +LNE+
Sbjct: 172 ITFNSLLSGLCKARRIEEARCMLNEI 197
>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 817
Score = 98.2 bits (243), Expect = 6e-19
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = -2
Query: 446 NSRIICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWE 267
NS I+ REG + L N+M+ KE+ P + TY L++GHC KDFSGAYVW R+M E
Sbjct: 704 NSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVE 763
Query: 266 KGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVAKHTVS-DDLSAAAMM 111
F+P+ +I NEL GL+ G LQ+ +V+ +E+ KG+ H S +++SA A M
Sbjct: 764 NNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGIINHWPSKEEISAVAKM 817
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
CR G++ +A+ ME + P+S+T+++LI+ C K+ A W +KM EKG PS
Sbjct: 397 CRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSV 456
Query: 245 NIYNELMTGLQNGGMLQQA-EVLNELWEKGVAKHTVS 138
YN L+ G + ++L ++ E GV + VS
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVS 493
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
CRE +++A +F++M ++ S VTY+TLI+G+CK + A+ +M EK P+
Sbjct: 222 CREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNI 281
Query: 245 NIYNELMTGLQNGGMLQQAEVL 180
+N L++GL +++A L
Sbjct: 282 ITFNSLLSGLCKMRKMKEARSL 303
>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 91.3 bits (225), Expect = 8e-17
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Frame = -2
Query: 446 NSRIICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWE 267
N I+ +EG + + +L NDM+++ ++P + TY LI GHCK KDF GAYVW R+M+E
Sbjct: 710 NCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFE 769
Query: 266 KGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVAKHTVSDDLSA 123
GF PS +I + L+TGL+ G A+V+ +E+ KG +D SA
Sbjct: 770 NGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKGKDDCRADEDASA 818
Score = 56.2 bits (134), Expect = 3e-06
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
C+ G++ +A ME + P+ VTY++L++ C+ K+ A +KM EKG +P+
Sbjct: 403 CQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNV 462
Query: 245 NIYNELMTGLQNGGMLQQA-EVLNELWEKGVAKHTVS 138
YN L+ G + + ++L E+ +KG+ + +S
Sbjct: 463 ETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVIS 499
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = -2
Query: 437 IICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGF 258
I C C++ N+ EA + DM + V+P++ Y+ LI+G C A A+ + +M +
Sbjct: 504 INCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREI 563
Query: 257 IPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVA 153
+P+ YN L+ GL G + +AE L +E+ KG++
Sbjct: 564 VPTLVTYNILINGLCKKGKVMEAENLASEITRKGLS 599
Score = 55.8 bits (133), Expect = 4e-06
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
C+E +++A LF++M + V P+ +TY+TLI+G+CK A+ +M + P+
Sbjct: 228 CKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287
Query: 245 NIYNELMTGLQNGGMLQQAE-VLNEL 171
+N L+ GL M+++A+ VL E+
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEM 313
>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product
[Arabidopsis thaliana] gi|28973713|gb|AAO64173.1| unknown
protein [Arabidopsis thaliana] gi|29824237|gb|AAP04079.1|
unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein
[Arabidopsis thaliana] gi|332004380|gb|AED91763.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 816
Score = 80.9 bits (198), Expect = 1e-13
Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Frame = -2
Query: 446 NSRIICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWE 267
NS I+ + + G + E L ++M +E+ P + TY+ +++GHC+ KD+ AYVW R+M E
Sbjct: 704 NSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQE 763
Query: 266 KGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGVAKHTVSDDLSA 123
KGF+ I NEL++GL+ ++AE V++E+ + + TV +DLSA
Sbjct: 764 KGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTVDEDLSA 812
Score = 59.3 bits (142), Expect = 3e-07
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
C+ + +A LF++M + +LPS +TY+TLI+G+CKA + ++ +M PS
Sbjct: 225 CKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSL 284
Query: 245 NIYNELMTGLQNGGMLQQAE-VLNELWEKG 159
+N L+ GL GM++ AE VL E+ + G
Sbjct: 285 ITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
>ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 78.2 bits (191), Expect = 7e-13
Identities = 36/90 (40%), Positives = 61/90 (67%)
Frame = -2
Query: 446 NSRIICRCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWE 267
NS I+ R+ V E HL +DM+ K ++P TY+ LI+G C KDF+GAY W R+M E
Sbjct: 678 NSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVE 737
Query: 266 KGFIPSFNIYNELMTGLQNGGMLQQAEVLN 177
+G + + ++ +L++GL+ GML++A++++
Sbjct: 738 RGLLLNVSMCYQLISGLREEGMLREAQIVS 767
Score = 63.2 bits (152), Expect = 2e-08
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = -2
Query: 425 CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRKMWEKGFIPSF 246
C+EG+V++A+ ME + + P+ +T++T+I C+ + A W R+M EKG P+
Sbjct: 371 CQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTV 430
Query: 245 NIYNELMTGL-QNGGMLQQAEVLNELWEKGVAKHTVS 138
YN L+ G Q G ++ E L+E+ + G+ + +S
Sbjct: 431 ETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVIS 467