BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028054
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515972.1| pentatricopeptide repeat-containing protein,...   184   6e-45
emb|CBI29027.3| unnamed protein product [Vitis vinifera]              179   2e-43
ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containi...   179   2e-43
ref|XP_002310070.1| predicted protein [Populus trichocarpa] gi|2...   179   3e-43
ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42

>ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544877|gb|EEF46392.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 546

 Score =  184 bits (467), Expect = 6e-45
 Identities = 88/117 (75%), Positives = 105/117 (89%)
 Frame = +2

Query: 5   KNLVSWNSMIDGYAKCGDIVSARGLFELMPERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           KNLVSWNSM+DG AKCG++V AR LF+LMP+RDV+SWSSLIDGYVK+GD+ +A+ +F++M
Sbjct: 178 KNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKM 237

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAKC 355
           RV G K NEVTMVSVLCACAHLGAL++GR+M  YV DN+LPLTLVL TSLVDMYAKC
Sbjct: 238 RVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKC 294



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
 Frame = +2

Query: 11  LVSWNSMIDGYAKCGDIVSARGLFELMPER--DVVSWSSLIDGYVKSGDHLEALEIFERM 184
           LV   S++D YAKCG I  A  +F  +P    DV+ W+++I G    G   E+L++F+ M
Sbjct: 281 LVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEM 340

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAK 352
             +G+K +E+T +S+L ACAH G +++       +  + + L +     +VD+ A+
Sbjct: 341 NFVGVKPDEITYLSLLHACAHGGLVKEAWYFFDCLGKHGMTLKIEHYACIVDVMAR 396


>emb|CBI29027.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  179 bits (455), Expect = 2e-43
 Identities = 87/117 (74%), Positives = 101/117 (86%)
 Frame = +2

Query: 5   KNLVSWNSMIDGYAKCGDIVSARGLFELMPERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           +N VSWN+M+DGYAKCGD+ SAR +FE MP+RDVVSWSS+IDG VK G++  AL IFERM
Sbjct: 21  RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 80

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAKC 355
           RV+G KANEVTMVSVLCACAHLGALEQGR M +Y+ DN +  TLVLRTSL+DMYAKC
Sbjct: 81  RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKC 137



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  LVSWNSMIDGYAKCGDIVSARGLFELMP--ERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           LV   S++D YAKCG I  A  +F  +P  + DV+ W+++I G    G   E+LE+F+ M
Sbjct: 124 LVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEM 183

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQ 265
           +VLG+  +E+T + +  ACAH G + +
Sbjct: 184 QVLGIVPDEITYLCLFSACAHGGLVHE 210


>ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  179 bits (455), Expect = 2e-43
 Identities = 87/117 (74%), Positives = 101/117 (86%)
 Frame = +2

Query: 5   KNLVSWNSMIDGYAKCGDIVSARGLFELMPERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           +N VSWN+M+DGYAKCGD+ SAR +FE MP+RDVVSWSS+IDG VK G++  AL IFERM
Sbjct: 176 RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 235

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAKC 355
           RV+G KANEVTMVSVLCACAHLGALEQGR M +Y+ DN +  TLVLRTSL+DMYAKC
Sbjct: 236 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKC 292



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  LVSWNSMIDGYAKCGDIVSARGLFELMP--ERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           LV   S++D YAKCG I  A  +F  +P  + DV+ W+++I G    G   E+LE+F+ M
Sbjct: 279 LVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEM 338

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQ 265
           +VLG+  +E+T + +  ACAH G + +
Sbjct: 339 QVLGIVPDEITYLCLFSACAHGGLVHE 365


>ref|XP_002310070.1| predicted protein [Populus trichocarpa] gi|222852973|gb|EEE90520.1|
           predicted protein [Populus trichocarpa]
          Length = 438

 Score =  179 bits (453), Expect = 3e-43
 Identities = 85/117 (72%), Positives = 100/117 (85%)
 Frame = +2

Query: 5   KNLVSWNSMIDGYAKCGDIVSARGLFELMPERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           KNLVSWNSM+DGYAKCG +  ARGLF+LMPERDV SWS LIDGY KSG++ +A+ +FE+M
Sbjct: 74  KNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKM 133

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAKC 355
           R  G KANEVTMVSVLCACAHLGAL++GR+M +Y+ DN   L LVLRTSL+DMYAKC
Sbjct: 134 RTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKC 190



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
 Frame = +2

Query: 8   NLVSWNSMIDGYAKCGDIVSARGLFELMPER--DVVSWSSLIDGYVKSGDHLEALEIFER 181
           NLV   S+ID YAKCG +  A  +F  +  R  DV+ W+++I G    G   E+L+++  
Sbjct: 176 NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTE 235

Query: 182 MRVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAK 352
           M++ G+K +E+T + +L ACAH G ++Q   + + +  N +         +VD+ A+
Sbjct: 236 MQIAGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMAR 292


>ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/117 (71%), Positives = 102/117 (87%)
 Frame = +2

Query: 5   KNLVSWNSMIDGYAKCGDIVSARGLFELMPERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           KN+VSWNSM+DGYAKCG++V A+  FE M E+DV SWSSLIDGYVK+G++ EA+ IFE+M
Sbjct: 178 KNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKM 237

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQGRIMQKYVQDNRLPLTLVLRTSLVDMYAKC 355
           +  G KANEVTMVSV CACAH+GALE+GR++ KY+ DN LPLTLVL+TSLVDMYAKC
Sbjct: 238 QSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKC 294



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  LVSWNSMIDGYAKCGDIVSARGLFELMP--ERDVVSWSSLIDGYVKSGDHLEALEIFERM 184
           LV   S++D YAKCG I  A  +F  +   + DV+ W+++I G    G   E+L++F+ M
Sbjct: 281 LVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEM 340

Query: 185 RVLGLKANEVTMVSVLCACAHLGALEQ 265
           +++G+  +EVT + +L ACAH G +++
Sbjct: 341 QIVGICPDEVTYLCLLAACAHGGLVKE 367