BLASTX nr result
ID: Coptis25_contig00028015
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028015 (578 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ... 146 2e-33 ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [... 146 3e-33 ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2... 144 1e-32 emb|CBI15412.3| unnamed protein product [Vitis vinifera] 141 9e-32 ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [S... 133 2e-29 >ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera] Length = 902 Score = 146 bits (369), Expect = 2e-33 Identities = 70/100 (70%), Positives = 85/100 (85%) Frame = +2 Query: 2 FANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPDDISRGAARAHKFL 181 FANFPESVV LAREKAAELEDFS I SNDA ++VGSKRKR PDDISRGAARAH+FL Sbjct: 802 FANFPESVVTLAREKAAELEDFSPTEIVSNDASDKVGSKRKRESSPDDISRGAARAHQFL 861 Query: 182 QDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 301 ++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF Sbjct: 862 KEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 901 >ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] gi|223549157|gb|EEF50646.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] Length = 936 Score = 146 bits (368), Expect = 3e-33 Identities = 71/100 (71%), Positives = 84/100 (84%) Frame = +2 Query: 2 FANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPDDISRGAARAHKFL 181 FANFPESVVALAREKAAELEDFS +I SND E+VGSKR R C PDD+SRGAARAHKFL Sbjct: 836 FANFPESVVALAREKAAELEDFSPNAIVSNDTTEKVGSKRNRKCDPDDVSRGAARAHKFL 895 Query: 182 QDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 301 ++FS LP++ MDL++ L+ VSKL+ L KDAA+C WL+QF Sbjct: 896 KEFSDLPLETMDLKEALQQVSKLKEGLEKDAANCQWLKQF 935 >ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1| predicted protein [Populus trichocarpa] Length = 944 Score = 144 bits (363), Expect = 1e-32 Identities = 69/100 (69%), Positives = 84/100 (84%) Frame = +2 Query: 2 FANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPDDISRGAARAHKFL 181 FANFPESVV LAREKAAELEDFS +I S+DA+EEVGSKRKR C DD+S+GAARAH+FL Sbjct: 844 FANFPESVVTLAREKAAELEDFSPTAIISDDAREEVGSKRKRECNMDDMSKGAARAHRFL 903 Query: 182 QDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 301 +DFS LP+D MDL+Q L + KL+++L KDA +C WL+QF Sbjct: 904 KDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQF 943 >emb|CBI15412.3| unnamed protein product [Vitis vinifera] Length = 945 Score = 141 bits (355), Expect = 9e-32 Identities = 70/103 (67%), Positives = 85/103 (82%), Gaps = 3/103 (2%) Frame = +2 Query: 2 FANFPESVVALAREKAAELEDFSSISITSNDAKEE---VGSKRKRVCGPDDISRGAARAH 172 FANFPESVV LAREKAAELEDFS I SNDA ++ VGSKRKR PDDISRGAARAH Sbjct: 842 FANFPESVVTLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKRESSPDDISRGAARAH 901 Query: 173 KFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 301 +FL++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF Sbjct: 902 QFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 944 >ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor] gi|241926499|gb|EER99643.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor] Length = 942 Score = 133 bits (335), Expect = 2e-29 Identities = 64/100 (64%), Positives = 84/100 (84%) Frame = +2 Query: 2 FANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPDDISRGAARAHKFL 181 FANFPE+VVALA+ KAAELEDFS+ S+D+K+EVGSKRKRV PDD++RGAARA FL Sbjct: 842 FANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARARLFL 901 Query: 182 QDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 301 +DF++LP+DEMD + +E V+K++++L KDAAD WL+QF Sbjct: 902 EDFAALPVDEMDRSKIVEMVTKMKSDLQKDAADNPWLQQF 941