BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028011
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    86   4e-15
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             83   2e-14
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    80   2e-13
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   1e-12

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/110 (36%), Positives = 59/110 (53%)
 Frame = -3

Query: 331 RYQCSAGQYINKDKCKIFLSPMTTCRRESIVSFLGIKEGGFPEKYLGVPIITGRLTKANL 152
           RY   +GQ +N  K  IF   +T  R  +IV+ LG   G  P  YLG PI  G+    + 
Sbjct: 452 RYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHF 511

Query: 151 APLVDKIRKKATSWAGKMLSFQGRVVLARHVLNSIPVHNLAIYKWPASVI 2
            P+ DK++ K   W   +LS  GR+ L + V+ S+ VH ++IY WP  ++
Sbjct: 512 QPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKIL 561


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 45/110 (40%), Positives = 62/110 (56%)
 Frame = -3

Query: 331 RYQCSAGQYINKDKCKIFLSPMTTCRRESIVSFLGIKEGGFPEKYLGVPIITGRLTKANL 152
           ++Q  +G Y N +K  IFLS +    RE I+  LG +EG  P KYLGVP+++ RL     
Sbjct: 14  KFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSRLKAIYC 73

Query: 151 APLVDKIRKKATSWAGKMLSFQGRVVLARHVLNSIPVHNLAIYKWPASVI 2
             LVD+I  K   W  + LS+ GRV L   VL SI V+  +++  P  VI
Sbjct: 74  KGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVI 123


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 37/88 (42%), Positives = 60/88 (68%)
 Frame = -3

Query: 319 SAGQYINKDKCKIFLSPMTTCRRESIVSFLGIKEGGFPEKYLGVPIITGRLTKANLAPLV 140
           ++G  +N  KC++FL  +T   ++ + S +GI  G FP KYLG+P+ T RLTKA+  PL+
Sbjct: 95  NSGLEVNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLL 154

Query: 139 DKIRKKATSWAGKMLSFQGRVVLARHVL 56
           +KIR K ++W+ K+LS+ G++ L   V+
Sbjct: 155 EKIRAKVSNWSSKLLSYAGKIQLVSVVI 182


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 33/101 (32%), Positives = 58/101 (57%)
 Frame = -3

Query: 304 INKDKCKIFLSPMTTCRRESIVSFLGIKEGGFPEKYLGVPIITGRLTKANLAPLVDKIRK 125
           +N +K  +F   ++  +   +++ +G   G  P  YLGVPI  G+    +L P+VDKI  
Sbjct: 2   VNPNKSTVFAGSISVSKLNQLINIIGFNHGTLPFTYLGVPIFKGKPKVIHLQPIVDKIIA 61

Query: 124 KATSWAGKMLSFQGRVVLARHVLNSIPVHNLAIYKWPASVI 2
           K ++W   +LS  GRV + + V+ S+  H++ +Y WP S++
Sbjct: 62  KLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLL 102


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 38/111 (34%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
 Frame = -3

Query: 331  RYQCSAGQYINKDKCKIFLSP-MTTCRRESIVSFLGIKEGGFPEKYLGVPIITGRLTKAN 155
            +Y+ ++GQ IN +K ++  S  ++  +++ + + L +++    EKYLG+P I+GR  KA 
Sbjct: 709  QYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAI 768

Query: 154  LAPLVDKIRKKATSWAGKMLSFQGRVVLARHVLNSIPVHNLAIYKWPASVI 2
               L+D+I KK   W  K+LS  G+ VL + V+ +IP + + +YK+P  +I
Sbjct: 769  FDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFII 819