BLASTX nr result
ID: Coptis25_contig00028005
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028005 (600 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|1... 167 2e-39 gb|ACB87913.1| SKP1-like protein 1 [Malus x domestica] 166 4e-39 ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|2235512... 164 1e-38 gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides] 164 1e-38 ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [V... 162 4e-38 >ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|118481562|gb|ABK92723.1| unknown [Populus trichocarpa] gi|222836822|gb|EEE75215.1| predicted protein [Populus trichocarpa] Length = 158 Score = 167 bits (422), Expect = 2e-39 Identities = 86/157 (54%), Positives = 111/157 (70%) Frame = +1 Query: 85 KMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVKFCE 264 + ++L SSDG+SFEV+E VALESQ IKH IED + D I LPNV SK L ++++C+ Sbjct: 5 RKISLRSSDGESFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKVIEYCK 61 Query: 265 KHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDNVVS 444 KHV KP+ ++ GDDELK WD EF+ +D L L+LAANYLNI+ LLD V Sbjct: 62 KHVETPKPEDRGTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKGLLDLTCQTVAD 121 Query: 445 MIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555 MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE Sbjct: 122 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158 >gb|ACB87913.1| SKP1-like protein 1 [Malus x domestica] Length = 156 Score = 166 bits (419), Expect = 4e-39 Identities = 87/162 (53%), Positives = 114/162 (70%) Frame = +1 Query: 70 ITTTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMI 249 ++++ K +TL SSDG+SFEVEE VALESQ IKH IED + D I LPNV SK L + Sbjct: 1 MSSSSKKITLKSSDGESFEVEEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKV 57 Query: 250 VKFCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIY 429 +++C++HV KPD S +D+LK WD+EF+ +D L L+LAANYLNI+ LLD Sbjct: 58 IEYCKRHVDAAKPDEKIS---EDDLKAWDQEFVKVDQATLFDLILAANYLNIKSLLDLTC 114 Query: 430 DNVVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555 V MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE Sbjct: 115 QTVADMIKGKTPEEIRKTFNINNDFTPEEEEEVRRENQWAFE 156 >ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|223551277|gb|EEF52763.1| skp1, putative [Ricinus communis] Length = 157 Score = 164 bits (414), Expect = 1e-38 Identities = 88/160 (55%), Positives = 111/160 (69%) Frame = +1 Query: 76 TTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVK 255 +T + +TL SSDG++FEV+E VALESQ IKH IED + D I LPNV SK L +++ Sbjct: 2 STSRKITLKSSDGETFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILSKVIE 58 Query: 256 FCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDN 435 +C+KHV K D SS DDELK WD EF+ +D L L+LAANYLNI+ LLD Sbjct: 59 YCKKHVETSKSDDRPSSV-DDELKTWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQT 117 Query: 436 VVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555 V MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE Sbjct: 118 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157 >gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides] Length = 158 Score = 164 bits (414), Expect = 1e-38 Identities = 85/157 (54%), Positives = 110/157 (70%) Frame = +1 Query: 85 KMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVKFCE 264 + ++L SSDG+SFEV+E VALESQ IKH IED + D I LPNV SK L ++++C+ Sbjct: 5 RKISLRSSDGESFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKVIEYCK 61 Query: 265 KHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDNVVS 444 KHV K + ++ GDDELK WD EF+ +D L L+LAANYLNI+ LLD V Sbjct: 62 KHVETPKSEDRGTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKGLLDLTCQTVAD 121 Query: 445 MIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555 MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE Sbjct: 122 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158 >ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|147788379|emb|CAN76662.1| hypothetical protein VITISV_040452 [Vitis vinifera] Length = 156 Score = 162 bits (410), Expect = 4e-38 Identities = 84/160 (52%), Positives = 112/160 (70%) Frame = +1 Query: 76 TTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVK 255 ++ + +TL SSDG++F+V+E VALESQ IKH IED + D I LPNV SK L +++ Sbjct: 2 SSSRKITLKSSDGEAFDVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILSKVIE 58 Query: 256 FCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDN 435 +C+KHV KP+ SG D+ELK WD +F+ +D L L+LAANYLNI+ LLD Sbjct: 59 YCKKHVEAPKPE--ERSGVDEELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQT 116 Query: 436 VVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555 V MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE Sbjct: 117 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156