BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028005
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|1...   167   2e-39
gb|ACB87913.1| SKP1-like protein 1 [Malus x domestica]                166   4e-39
ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|2235512...   164   1e-38
gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides]      164   1e-38
ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [V...   162   4e-38

>ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|118481562|gb|ABK92723.1|
           unknown [Populus trichocarpa]
           gi|222836822|gb|EEE75215.1| predicted protein [Populus
           trichocarpa]
          Length = 158

 Score =  167 bits (422), Expect = 2e-39
 Identities = 86/157 (54%), Positives = 111/157 (70%)
 Frame = +1

Query: 85  KMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVKFCE 264
           + ++L SSDG+SFEV+E VALESQ IKH IED   +  D  I LPNV SK L  ++++C+
Sbjct: 5   RKISLRSSDGESFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKVIEYCK 61

Query: 265 KHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDNVVS 444
           KHV   KP+   ++ GDDELK WD EF+ +D   L  L+LAANYLNI+ LLD     V  
Sbjct: 62  KHVETPKPEDRGTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKGLLDLTCQTVAD 121

Query: 445 MIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555
           MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE
Sbjct: 122 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158


>gb|ACB87913.1| SKP1-like protein 1 [Malus x domestica]
          Length = 156

 Score =  166 bits (419), Expect = 4e-39
 Identities = 87/162 (53%), Positives = 114/162 (70%)
 Frame = +1

Query: 70  ITTTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMI 249
           ++++ K +TL SSDG+SFEVEE VALESQ IKH IED   +  D  I LPNV SK L  +
Sbjct: 1   MSSSSKKITLKSSDGESFEVEEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKV 57

Query: 250 VKFCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIY 429
           +++C++HV   KPD   S   +D+LK WD+EF+ +D   L  L+LAANYLNI+ LLD   
Sbjct: 58  IEYCKRHVDAAKPDEKIS---EDDLKAWDQEFVKVDQATLFDLILAANYLNIKSLLDLTC 114

Query: 430 DNVVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555
             V  MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE
Sbjct: 115 QTVADMIKGKTPEEIRKTFNINNDFTPEEEEEVRRENQWAFE 156


>ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|223551277|gb|EEF52763.1| skp1,
           putative [Ricinus communis]
          Length = 157

 Score =  164 bits (414), Expect = 1e-38
 Identities = 88/160 (55%), Positives = 111/160 (69%)
 Frame = +1

Query: 76  TTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVK 255
           +T + +TL SSDG++FEV+E VALESQ IKH IED   +  D  I LPNV SK L  +++
Sbjct: 2   STSRKITLKSSDGETFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILSKVIE 58

Query: 256 FCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDN 435
           +C+KHV   K D   SS  DDELK WD EF+ +D   L  L+LAANYLNI+ LLD     
Sbjct: 59  YCKKHVETSKSDDRPSSV-DDELKTWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQT 117

Query: 436 VVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555
           V  MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE
Sbjct: 118 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157


>gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 158

 Score =  164 bits (414), Expect = 1e-38
 Identities = 85/157 (54%), Positives = 110/157 (70%)
 Frame = +1

Query: 85  KMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVKFCE 264
           + ++L SSDG+SFEV+E VALESQ IKH IED   +  D  I LPNV SK L  ++++C+
Sbjct: 5   RKISLRSSDGESFEVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILAKVIEYCK 61

Query: 265 KHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDNVVS 444
           KHV   K +   ++ GDDELK WD EF+ +D   L  L+LAANYLNI+ LLD     V  
Sbjct: 62  KHVETPKSEDRGTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKGLLDLTCQTVAD 121

Query: 445 MIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555
           MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE
Sbjct: 122 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158


>ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera]
           gi|147788379|emb|CAN76662.1| hypothetical protein
           VITISV_040452 [Vitis vinifera]
          Length = 156

 Score =  162 bits (410), Expect = 4e-38
 Identities = 84/160 (52%), Positives = 112/160 (70%)
 Frame = +1

Query: 76  TTKKMVTLVSSDGKSFEVEEDVALESQAIKHWIEDRSNEDDDGKIHLPNVDSKNLEMIVK 255
           ++ + +TL SSDG++F+V+E VALESQ IKH IED   +  D  I LPNV SK L  +++
Sbjct: 2   SSSRKITLKSSDGEAFDVDEAVALESQTIKHMIED---DCADNGIPLPNVTSKILSKVIE 58

Query: 256 FCEKHVSCRKPDVGSSSGGDDELKEWDKEFLVMDIMDLGSLLLAANYLNIRCLLDAIYDN 435
           +C+KHV   KP+    SG D+ELK WD +F+ +D   L  L+LAANYLNI+ LLD     
Sbjct: 59  YCKKHVEAPKPE--ERSGVDEELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQT 116

Query: 436 VVSMIKGKSVDEIRKTFRITSGFTPEEDEEIRSQSTWAFE 555
           V  MIKGK+ +EIRKTF I + FTPEE+EE+R ++ WAFE
Sbjct: 117 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156