BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028001
         (944 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282100.2| PREDICTED: DNA repair and recombination prot...   176   7e-42
emb|CBI32424.3| unnamed protein product [Vitis vinifera]              176   7e-42
emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera]   164   4e-38
ref|XP_002518776.1| DNA repair and recombination protein RAD54B,...   161   2e-37
dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thali...   160   5e-37

>ref|XP_002282100.2| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 934

 Score =  176 bits (446), Expect = 7e-42
 Identities = 106/223 (47%), Positives = 128/223 (57%), Gaps = 4/223 (1%)
 Frame = -2

Query: 829  SEIHEKMNCIRCTTCNLEVESSDTVRNVGAGSDSGDVCE---VDEDDIGGFAAISGCLHK 659
            SEIHEKMNC RC   +   E  ++VR         + C+   +D DDIGGFA I+GCLHK
Sbjct: 717  SEIHEKMNCNRCQNYD---ERPESVREEDGFESKNEGCQSYQMDCDDIGGFAGITGCLHK 773

Query: 658  LKNSEKQIGSPLEEDLGSWGHHISPTSVPDAILQASAGDEVTFVFTNQVDGKLIPIES-T 482
            LK SEKQ+G+ LEEDLGSWGHH   TSVPDAI QASAGDEVTFVFTNQVDGKL+P+ES  
Sbjct: 774  LKRSEKQVGTALEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKV 833

Query: 481  RLKPREVETHQAHSGFTGRTKNQRSPFLSQPRPQQTPTISCNTTSTISRTPTPFTPLQSG 302
            R   + VE ++  S   G  K  + P L     Q  P +S    S  S + +   P    
Sbjct: 834  RANMQGVEANKNQSDKRG--KLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFHLA 891

Query: 301  SIKLAXXXXXXXXXXXXXXXTSLAKHLPLKRSSAESVGNDDDF 173
             IK +                S+   LPLKR S +SV +DDDF
Sbjct: 892  GIK-SMRTSKGTPSVTLKPKLSIGSQLPLKRLSPDSVQHDDDF 933


>emb|CBI32424.3| unnamed protein product [Vitis vinifera]
          Length = 1112

 Score =  176 bits (446), Expect = 7e-42
 Identities = 106/223 (47%), Positives = 128/223 (57%), Gaps = 4/223 (1%)
 Frame = -2

Query: 829  SEIHEKMNCIRCTTCNLEVESSDTVRNVGAGSDSGDVCE---VDEDDIGGFAAISGCLHK 659
            SEIHEKMNC RC   +   E  ++VR         + C+   +D DDIGGFA I+GCLHK
Sbjct: 895  SEIHEKMNCNRCQNYD---ERPESVREEDGFESKNEGCQSYQMDCDDIGGFAGITGCLHK 951

Query: 658  LKNSEKQIGSPLEEDLGSWGHHISPTSVPDAILQASAGDEVTFVFTNQVDGKLIPIES-T 482
            LK SEKQ+G+ LEEDLGSWGHH   TSVPDAI QASAGDEVTFVFTNQVDGKL+P+ES  
Sbjct: 952  LKRSEKQVGTALEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKV 1011

Query: 481  RLKPREVETHQAHSGFTGRTKNQRSPFLSQPRPQQTPTISCNTTSTISRTPTPFTPLQSG 302
            R   + VE ++  S   G  K  + P L     Q  P +S    S  S + +   P    
Sbjct: 1012 RANMQGVEANKNQSDKRG--KLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFHLA 1069

Query: 301  SIKLAXXXXXXXXXXXXXXXTSLAKHLPLKRSSAESVGNDDDF 173
             IK +                S+   LPLKR S +SV +DDDF
Sbjct: 1070 GIK-SMRTSKGTPSVTLKPKLSIGSQLPLKRLSPDSVQHDDDF 1111


>emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera]
          Length = 985

 Score =  164 bits (414), Expect = 4e-38
 Identities = 93/178 (52%), Positives = 111/178 (62%), Gaps = 4/178 (2%)
 Frame = -2

Query: 829  SEIHEKMNCIRCTTCNLEVESSDTVRNVGAGSDSGDVCE---VDEDDIGGFAAISGCLHK 659
            SEIHEKMNC RC   +   E  ++VR         + C+   +D DDIGGFA I+GCLHK
Sbjct: 696  SEIHEKMNCNRCQNYD---ERPESVREEDGFKSKNEGCQSYQMDCDDIGGFAGITGCLHK 752

Query: 658  LKNSEKQIGSPLEEDLGSWGHHISPTSVPDAILQASAGDEVTFVFTNQVDGKLIPIES-T 482
            LK SEKQ+G+PLEEDLGSWGHH   TSVPDAI QASAGDEVTFVFTNQVDGKL+P+ES  
Sbjct: 753  LKRSEKQVGTPLEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKV 812

Query: 481  RLKPREVETHQAHSGFTGRTKNQRSPFLSQPRPQQTPTISCNTTSTISRTPTPFTPLQ 308
            R   + VE ++  S   G  K  + P L     Q  P +S    S  S + +   P Q
Sbjct: 813  RANMQGVEANKNQSDKRG--KLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFQ 868


>ref|XP_002518776.1| DNA repair and recombination protein RAD54B, putative [Ricinus
            communis] gi|223542157|gb|EEF43701.1| DNA repair and
            recombination protein RAD54B, putative [Ricinus communis]
          Length = 940

 Score =  161 bits (407), Expect = 2e-37
 Identities = 103/225 (45%), Positives = 127/225 (56%), Gaps = 6/225 (2%)
 Frame = -2

Query: 829  SEIHEKMNCIRCTTCNLEVESSDTVRNVGAGSDSGDV---CEVDED--DIGGFAAISGCL 665
            SEIHEKMNC RC   +  +ES           + G V   C+ DE+  DIGGFA I+G L
Sbjct: 725  SEIHEKMNCDRCLFNDDGLES--------IMDEDGSVSRRCKSDEEVFDIGGFAKIAGIL 776

Query: 664  HKLKNSEKQIGSPLEEDLGSWGHHISPTSVPDAILQASAGDEVTFVFTNQVDGKLIPIES 485
            H+LK+SEKQ+G+PLEEDLGSWGHH   TSVPDAILQASAGDEVTFVFTNQVDGKL+PIES
Sbjct: 777  HELKSSEKQVGTPLEEDLGSWGHHFHSTSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 836

Query: 484  TRLKPREVETHQAHSGFTGRTKNQRSPFLSQPRPQQTPTISCNTTSTISRTPTPFTPLQS 305
            T   P+ +E     +   G+    R+  L Q   +   +IS +  S        F PL+ 
Sbjct: 837  T-ASPKMLEIKGNQNQHDGKENMSRTSRLFQ-HQKLLQSISASRDSLEETLSASFKPLEG 894

Query: 304  GSIKLAXXXXXXXXXXXXXXXTSLAKHLPLKRSSAESV-GNDDDF 173
             ++K                  S    LP KR    +V  +DDDF
Sbjct: 895  ATVKRRRTSLKGTTDSTLKSRLSSGTQLPFKRVFPYNVEQHDDDF 939


>dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thaliana]
          Length = 959

 Score =  160 bits (404), Expect = 5e-37
 Identities = 91/232 (39%), Positives = 125/232 (53%)
 Frame = -2

Query: 865  MNAQIVTSPVTLSEIHEKMNCIRCTTCNLEVESSDTVRNVGAGSDSGDVCEVDEDDIGGF 686
            ++  + +  V  SEIHEKM+C RC     +   ++ +      +   + C++D++DIGGF
Sbjct: 752  LSQSLFSGNVARSEIHEKMSCSRCQN---DASGTENIEEGNENNVDDNACQIDQEDIGGF 808

Query: 685  AAISGCLHKLKNSEKQIGSPLEEDLGSWGHHISPTSVPDAILQASAGDEVTFVFTNQVDG 506
            A  +GC + LKNSE+Q+G+PLEEDLGSWGHH +  SVPDAILQASAGDEVTFVFTNQVDG
Sbjct: 809  AKDAGCFNLLKNSERQVGTPLEEDLGSWGHHFTSKSVPDAILQASAGDEVTFVFTNQVDG 868

Query: 505  KLIPIESTRLKPREVETHQAHSGFTGRTKNQRSPFLSQPRPQQTPTISCNTTSTISRTPT 326
            KL+PIES  + P+ VE+ +         +NQ     +  +PQQ P               
Sbjct: 869  KLVPIES-NVSPKTVESEE-------HNRNQPVNKRAFNKPQQRPR-------------E 907

Query: 325  PFTPLQSGSIKLAXXXXXXXXXXXXXXXTSLAKHLPLKRSSAESVGNDDDFM 170
            P  PL                             + L+R +  SV +DDDF+
Sbjct: 908  PLQPLSLNETTKRVKLSTYKRLHGNSNIDDAQIKMSLQRPNLVSVNHDDDFV 959