BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027948
         (986 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a...   389   e-106
ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis ...   388   e-105
ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|2026...   379   e-103
sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related m...   379   e-103
ref|XP_003624935.1| DNA repair protein RAD5 [Medicago truncatula...   359   6e-97

>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A member 3-like 1-like
            [Vitis vinifera]
          Length = 874

 Score =  389 bits (998), Expect = e-106
 Identities = 208/336 (61%), Positives = 243/336 (72%), Gaps = 10/336 (2%)
 Frame = +2

Query: 5    ELPPFWEEKDGGYMNVLTNFHTDKRPVPLRGGIFADDMGLGKTLTLLSLIATNRAENDVT 184
            ELPPFWE+++G Y+NVLTN+ T+KRP PLRGGIFADDMGLGKTLTLL LIA ++  +D++
Sbjct: 234  ELPPFWEKQNGSYVNVLTNYQTNKRPEPLRGGIFADDMGLGKTLTLLCLIAFDKCSSDLS 293

Query: 185  LG---DNXXXXXXXXXXXXXXXXXXXXXXAVNS-----RKKRKMSDPHIEDK-EEEGVRT 337
                 DN                       V+      RKKRK  D   +D  +   V +
Sbjct: 294  YSVNRDNIEKLGEEDEELIVSSGKKSRKGRVSRKASGLRKKRKTDDTPSDDMLKGNSVVS 353

Query: 338  KGTLVVCPPSVMSTWITQLTEHTRRGSFKVYLYYGGERTQIVRELQKYDLVLTTYSTLAA 517
            K TL+VCPPSV STW+TQL EHT     KVY+YYG  RTQ   ELQKYD+VLTTYSTLA 
Sbjct: 354  KTTLIVCPPSVFSTWVTQLLEHTTPKRLKVYMYYGN-RTQEAEELQKYDIVLTTYSTLAT 412

Query: 518  EQNRE-SPIKKMEWFRVILDEAHVIKNEGALQSQAVIGLKAKRRWVVTGTPIQNGSLDLF 694
            E+    SP+KK+EW+RVILDEAH+IKN  A QSQAV  L+AKRRWVVTGTPIQNG+ DLF
Sbjct: 413  EEAWSGSPVKKIEWWRVILDEAHMIKNVNAQQSQAVTNLRAKRRWVVTGTPIQNGTFDLF 472

Query: 695  SLMAFLKFEPFSIKSYWLSLVQRPLSQGNESGLSRLQILMGTISLRRIKDNIDIGLPPKT 874
            SLMAFL+FEPFSIKSYW SLVQRPL QG E GLSRLQ+LM TISLRR KD   IGLPPK+
Sbjct: 473  SLMAFLRFEPFSIKSYWQSLVQRPLGQGKEKGLSRLQVLMATISLRRTKDKGLIGLPPKS 532

Query: 875  IETCFVDLSARERELYDQMENEARTLVKAYICVNSV 982
            +ETCFV+LSA ERELYDQME E + +++ YI   SV
Sbjct: 533  VETCFVELSAEERELYDQMEAEGKCVIRDYIDAGSV 568


>ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
            gi|297316976|gb|EFH47398.1| SNF2 domain-containing
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 861

 Score =  388 bits (996), Expect = e-105
 Identities = 200/322 (62%), Positives = 234/322 (72%), Gaps = 1/322 (0%)
 Frame = +2

Query: 5    ELPPFWEEKDGGYMNVLTNFHTDKRPVPLRGGIFADDMGLGKTLTLLSLIATNRAENDVT 184
            ELPPFWEEKDG ++N LTN+ +DKRP PLRGG+FADDMGLGKTLTLLSLIA +R  N  T
Sbjct: 230  ELPPFWEEKDGEFLNTLTNYRSDKRPEPLRGGVFADDMGLGKTLTLLSLIAFDRYGNAST 289

Query: 185  LGDNXXXXXXXXXXXXXXXXXXXXXXAVNSRKKRKMSDPHIEDKEEEGVRTKGTLVVCPP 364
                                      +  SR ++K+     +D     V  K TL+VCPP
Sbjct: 290  STPTKEPLDVEGDKIEKKGKKRGRGKSSESRTRKKLKP---DDVVGMNVSQKTTLIVCPP 346

Query: 365  SVMSTWITQLTEHTRRGSFKVYLYYGGERTQIVRELQKYDLVLTTYSTLAAEQNRE-SPI 541
            SV+S WITQL EHT +GS KVY+Y+GGERT  V EL KYDLVLTTYSTLA E++ E SP+
Sbjct: 347  SVISAWITQLEEHTVQGSLKVYMYHGGERTDDVNELMKYDLVLTTYSTLAVEESWEDSPV 406

Query: 542  KKMEWFRVILDEAHVIKNEGALQSQAVIGLKAKRRWVVTGTPIQNGSLDLFSLMAFLKFE 721
            KKMEW R+ILDEAH IKN  A QS+ V  LKA RRW VTGTPIQNGS DL+SLMAFL+FE
Sbjct: 407  KKMEWLRIILDEAHTIKNANAQQSRVVSKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFE 466

Query: 722  PFSIKSYWLSLVQRPLSQGNESGLSRLQILMGTISLRRIKDNIDIGLPPKTIETCFVDLS 901
            PFSIKSYW SL+QRPL QGN+ GLSRLQ+LM TISLRR K+   IGLPPKT+ETC+V+LS
Sbjct: 467  PFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGLPPKTVETCYVELS 526

Query: 902  ARERELYDQMENEARTLVKAYI 967
              ER+LYD ME EA+ +V+  I
Sbjct: 527  PEERQLYDHMEGEAKGVVQNLI 548


>ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|20260624|gb|AAM13210.1|
            helicase-like transcription factor-like protein
            [Arabidopsis thaliana] gi|31711770|gb|AAP68241.1|
            At5g05130 [Arabidopsis thaliana]
            gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis
            thaliana]
          Length = 862

 Score =  379 bits (973), Expect = e-103
 Identities = 196/322 (60%), Positives = 230/322 (71%), Gaps = 1/322 (0%)
 Frame = +2

Query: 5    ELPPFWEEKDGGYMNVLTNFHTDKRPVPLRGGIFADDMGLGKTLTLLSLIATNRAENDVT 184
            ELPPFWEEKDG ++N LTN+ +DKRP PLRGG+FADDMGLGKTLTLLSLIA +R  N  T
Sbjct: 231  ELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNAST 290

Query: 185  LGDNXXXXXXXXXXXXXXXXXXXXXXAVNSRKKRKMSDPHIEDKEEEGVRTKGTLVVCPP 364
                                      +  S  ++K+     +D     V  K TL+VCPP
Sbjct: 291  STPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKT---DDVVGMNVSQKTTLIVCPP 347

Query: 365  SVMSTWITQLTEHTRRGSFKVYLYYGGERTQIVRELQKYDLVLTTYSTLAAEQNRE-SPI 541
            SV+S WITQL EHT  G  KVY+Y+GGERT  V EL KYD+VLTTY TLA E++ E SP+
Sbjct: 348  SVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPV 407

Query: 542  KKMEWFRVILDEAHVIKNEGALQSQAVIGLKAKRRWVVTGTPIQNGSLDLFSLMAFLKFE 721
            KKMEW R+ILDEAH IKN  A QS+ V  LKA RRW VTGTPIQNGS DL+SLMAFL+FE
Sbjct: 408  KKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFE 467

Query: 722  PFSIKSYWLSLVQRPLSQGNESGLSRLQILMGTISLRRIKDNIDIGLPPKTIETCFVDLS 901
            PFSIKSYW SL+QRPL QGN+ GLSRLQ+LM TISLRR K+   IGLPPKT+ETC+V+LS
Sbjct: 468  PFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGLPPKTVETCYVELS 527

Query: 902  ARERELYDQMENEARTLVKAYI 967
              ER+LYD ME EA+ +V+  I
Sbjct: 528  PEERQLYDHMEGEAKGVVQNLI 549


>sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 1; Short=SMARCA3-like protein 1
            gi|10178052|dbj|BAB11535.1| helicase-like transcription
            factor-like protein [Arabidopsis thaliana]
          Length = 881

 Score =  379 bits (973), Expect = e-103
 Identities = 196/322 (60%), Positives = 230/322 (71%), Gaps = 1/322 (0%)
 Frame = +2

Query: 5    ELPPFWEEKDGGYMNVLTNFHTDKRPVPLRGGIFADDMGLGKTLTLLSLIATNRAENDVT 184
            ELPPFWEEKDG ++N LTN+ +DKRP PLRGG+FADDMGLGKTLTLLSLIA +R  N  T
Sbjct: 250  ELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNAST 309

Query: 185  LGDNXXXXXXXXXXXXXXXXXXXXXXAVNSRKKRKMSDPHIEDKEEEGVRTKGTLVVCPP 364
                                      +  S  ++K+     +D     V  K TL+VCPP
Sbjct: 310  STPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKT---DDVVGMNVSQKTTLIVCPP 366

Query: 365  SVMSTWITQLTEHTRRGSFKVYLYYGGERTQIVRELQKYDLVLTTYSTLAAEQNRE-SPI 541
            SV+S WITQL EHT  G  KVY+Y+GGERT  V EL KYD+VLTTY TLA E++ E SP+
Sbjct: 367  SVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPV 426

Query: 542  KKMEWFRVILDEAHVIKNEGALQSQAVIGLKAKRRWVVTGTPIQNGSLDLFSLMAFLKFE 721
            KKMEW R+ILDEAH IKN  A QS+ V  LKA RRW VTGTPIQNGS DL+SLMAFL+FE
Sbjct: 427  KKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFE 486

Query: 722  PFSIKSYWLSLVQRPLSQGNESGLSRLQILMGTISLRRIKDNIDIGLPPKTIETCFVDLS 901
            PFSIKSYW SL+QRPL QGN+ GLSRLQ+LM TISLRR K+   IGLPPKT+ETC+V+LS
Sbjct: 487  PFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGLPPKTVETCYVELS 546

Query: 902  ARERELYDQMENEARTLVKAYI 967
              ER+LYD ME EA+ +V+  I
Sbjct: 547  PEERQLYDHMEGEAKGVVQNLI 568


>ref|XP_003624935.1| DNA repair protein RAD5 [Medicago truncatula]
            gi|124360542|gb|ABN08552.1| SNF2-related; Zinc finger,
            RING-type; ATP-requiring DNA helicase RecQ [Medicago
            truncatula] gi|355499950|gb|AES81153.1| DNA repair
            protein RAD5 [Medicago truncatula]
          Length = 844

 Score =  359 bits (921), Expect = 6e-97
 Identities = 188/319 (58%), Positives = 228/319 (71%), Gaps = 1/319 (0%)
 Frame = +2

Query: 2    EELPPFWEEKDGGYMNVLTNFHTDKRPVPLRGGIFADDMGLGKTLTLLSLIATNRAENDV 181
            ++LPPFWEEK G ++NVLTN+ T+ RP PLRGGIFAD MGLGKTLTLLSLI+ ++ +   
Sbjct: 219  QDLPPFWEEKVGNFVNVLTNYQTNARPEPLRGGIFADGMGLGKTLTLLSLISYDKMK--- 275

Query: 182  TLGDNXXXXXXXXXXXXXXXXXXXXXXAVNSRKKRKMSDPHIEDKEEEGVRTKGTLVVCP 361
                                        + S KKR  S   +E  E E   T GTL+VCP
Sbjct: 276  ----------------------------MKSGKKRGRSS--VERVESE---TNGTLIVCP 302

Query: 362  PSVMSTWITQLTEHTRRGSFKVYLYYGGERTQIVRELQKYDLVLTTYSTLAAEQN-RESP 538
            PSV+STWITQL EHT RG+ KVY+YYG  RTQ   EL+KYD+VLTTY+TL AE    ++P
Sbjct: 303  PSVISTWITQLEEHTNRGTLKVYMYYGDRRTQDAEELRKYDIVLTTYATLGAELRCSDTP 362

Query: 539  IKKMEWFRVILDEAHVIKNEGALQSQAVIGLKAKRRWVVTGTPIQNGSLDLFSLMAFLKF 718
            +KK+ W R++LDEAH IKN  A QSQAVI L AKRRW VTGTPIQNGS DLFSLMAFL F
Sbjct: 363  VKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHF 422

Query: 719  EPFSIKSYWLSLVQRPLSQGNESGLSRLQILMGTISLRRIKDNIDIGLPPKTIETCFVDL 898
            EPFSIKSYW SLVQRPL+QG ++G+SRLQ+LM  ISLRR KD    GLPPK +ETC+V+L
Sbjct: 423  EPFSIKSYWQSLVQRPLNQGKQTGMSRLQVLMSAISLRRTKDTALGGLPPKIVETCYVEL 482

Query: 899  SARERELYDQMENEARTLV 955
            S  ER+LYD+++ E ++L+
Sbjct: 483  SFEERKLYDEVKEEIKSLM 501