BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027933
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 ...   133   1e-29
ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinu...   122   3e-26
ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|2...   119   2e-25
ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-...   110   2e-22
ref|XP_004159882.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   108   6e-22

>ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera]
           gi|297739540|emb|CBI29722.3| unnamed protein product
           [Vitis vinifera]
          Length = 1458

 Score =  133 bits (335), Expect = 1e-29
 Identities = 68/122 (55%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   KSQKAKRLRTIYDKLSVEGFTSNQIEIALSALNEDATFEAALDWLCLNILGNELALKFSR 182
           K+QKAK+LR++Y+KLS EGF+++ IE+ALSAL E ATFE+ALDWLC N+  NEL LKFS 
Sbjct: 64  KAQKAKKLRSVYEKLSCEGFSNDHIELALSALKEGATFESALDWLCFNLSSNELPLKFSS 123

Query: 183 GASL-IDQGASTSIISTARED*VPPTHHPSTQDEGKVSEVSYKIKAHVDEDTLDMRQPSQ 359
           G SL  ++G S  IISTARED  P  +     ++ +VS +S +IK   D+D++D RQ SQ
Sbjct: 124 GTSLHANEGGSIGIISTAREDWTPSVYSSGNIEDDEVSGISIRIKGRRDDDSVDSRQQSQ 183

Query: 360 AD 365
           AD
Sbjct: 184 AD 185


>ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1509

 Score =  122 bits (306), Expect = 3e-26
 Identities = 63/125 (50%), Positives = 89/125 (71%), Gaps = 4/125 (3%)
 Frame = +3

Query: 3   KSQKAKRLRTIYDKLSVEGFTSNQIEIALSALNEDATFEAALDWLCLNILGNELALKFSR 182
           K+QKAKRL+ +Y+KLS EGF+++QIE+AL++L ++ATFE+ALDWLC N+ GNEL +KFS 
Sbjct: 60  KAQKAKRLKNVYEKLSCEGFSNDQIELALTSLKDNATFESALDWLCFNLPGNELPVKFSS 119

Query: 183 GASLIDQGASTSIISTARED*VPPTHHPSTQDEGKVSEVSYKIKAHVDED---TLDMRQP 353
           G SL     S S++STARED  P  +  +T+++ +V     +IK   D+D      +RQP
Sbjct: 120 GTSLYASEGSVSVVSTAREDRTPTVNAANTEEDVQVQAAFVRIKGRRDDDDDNDTSLRQP 179

Query: 354 -SQAD 365
            SQAD
Sbjct: 180 SSQAD 184


>ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|222838999|gb|EEE77350.1|
           predicted protein [Populus trichocarpa]
          Length = 870

 Score =  119 bits (299), Expect = 2e-25
 Identities = 72/130 (55%), Positives = 92/130 (70%), Gaps = 9/130 (6%)
 Frame = +3

Query: 3   KSQKAKRLRTIYDKLSVEGFTSNQIEIALSALNEDATFEAALDWLCLNILGNELALKFSR 182
           K+QKAK+L+ IY+KLS EGF+++ IE+ALS+L ++ATFE ALDWLCLN+ GNEL LKFS 
Sbjct: 66  KAQKAKKLKNIYEKLSCEGFSNDHIELALSSLKDNATFETALDWLCLNLAGNELPLKFSG 125

Query: 183 GASL-IDQGA-STSIISTARED*VPPTHHPSTQDEGKVSE--VSYKIKAHVDED-----T 335
           G SL  D+G  + S++STARED VP     S + EG+  E  V  + KA  DE+      
Sbjct: 126 GTSLNSDRGEWAVSVVSTAREDWVPYV-DSSRRVEGEEEEQRVLVRTKARWDEEDGDGNV 184

Query: 336 LDMRQPSQAD 365
           LD RQPSQAD
Sbjct: 185 LDFRQPSQAD 194


>ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-like [Glycine max]
          Length = 1528

 Score =  110 bits (274), Expect = 2e-22
 Identities = 63/122 (51%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   KSQKAKRLRTIYDKLSVEGFTSNQIEIALSALNEDATFEAALDWLCLNILGNELALKFSR 182
           K+QKAK+L+ +Y+KLS EGF ++QIE++LSAL E ATFE+ALDWLCLN+ GNEL LKFS 
Sbjct: 50  KAQKAKKLKAVYEKLSCEGFGNHQIELSLSALREAATFESALDWLCLNLPGNELPLKFST 109

Query: 183 GASLIDQGASTSIISTARED*VPPTHHPSTQDEGKVSEVSYKIKAH-VDEDTLDMRQPSQ 359
           G S  DQG S  +IS       P     S   E +  E    I+    ++DTLD R  SQ
Sbjct: 110 GISHYDQGGSVGVISNQ-----PAVDAASITIEEEAPESPVLIRRQWKNDDTLDSRLTSQ 164

Query: 360 AD 365
           AD
Sbjct: 165 AD 166


>ref|XP_004159882.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101226815 [Cucumis sativus]
          Length = 844

 Score =  108 bits (269), Expect = 6e-22
 Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3   KSQKAKRLRTIYDKLSVEGFTSNQIEIALSALNEDATFEAALDWLCLNILGNELALKFSR 182
           K QK K+L+ +Y+KLS EGFT++QIE+ALSA+ + ATFEAALDWLCLN+  +EL LKFS 
Sbjct: 71  KVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLPSSELPLKFSS 130

Query: 183 GASL-IDQGASTSIISTARED*VPPTHHPSTQDEGKVSEVSYKIKAHVDEDTLDMRQPSQ 359
           G SL    G S  I+ TA++D  P     S++DE    +V   +    D+D LD  Q SQ
Sbjct: 131 GTSLHTHVGGSVRILQTAQKD-CPSMVVQSSKDEDGNKDVPIILSRGKDDDKLDRFQSSQ 189

Query: 360 AD 365
           A+
Sbjct: 190 AE 191