BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027923
         (662 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265627.1| PREDICTED: zinc finger CCHC-type and RNA-bin...   213   3e-53
ref|NP_187651.1| small nuclear ribonucleoprotein 31 kDa protein ...   199   5e-49
ref|XP_002882666.1| hypothetical protein ARALYDRAFT_897216 [Arab...   198   9e-49
ref|XP_002529595.1| RNA binding motif protein, putative [Ricinus...   195   6e-48
ref|XP_002315325.1| predicted protein [Populus trichocarpa] gi|2...   195   7e-48

>ref|XP_002265627.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
           protein 1 [Vitis vinifera] gi|147789032|emb|CAN75783.1|
           hypothetical protein VITISV_022491 [Vitis vinifera]
          Length = 250

 Score =  213 bits (542), Expect = 3e-53
 Identities = 110/158 (69%), Positives = 120/158 (75%), Gaps = 8/158 (5%)
 Frame = -1

Query: 626 EEDETLYHRYXXXXXXXXXXXXXXXXXXL--------APSKSTVYVSNLDYTLTNSDLFT 471
           EEDETLY+RY                           APSKSTVYVSNLDYTLTNSDLFT
Sbjct: 10  EEDETLYYRYASSSIPNPNPKSNSSKLQKRSSGSGSLAPSKSTVYVSNLDYTLTNSDLFT 69

Query: 470 IFSTFGKVAKVTILKDRKTRRSRGVAFVLYVSKEDAVKAVKGMEGKVLNKRSLRVSIATD 291
           IFSTFGKVAKVTILKDR TR SRGVAFVL+VS+++A+ A + M GKVLNKR+L  SIA D
Sbjct: 70  IFSTFGKVAKVTILKDRHTRHSRGVAFVLFVSRDEAIAAAREMNGKVLNKRTLTASIAAD 129

Query: 290 NGRAAEFIRRKVYKDKSKCYECGEDGHLSYECPRNMLG 177
           NGRAAEFIRR+VYKDKS+CYECGE GHLSYECPRN LG
Sbjct: 130 NGRAAEFIRRRVYKDKSRCYECGEGGHLSYECPRNQLG 167


>ref|NP_187651.1| small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis
           thaliana] gi|12322795|gb|AAG51392.1|AC011560_24
           hypothetical protein; 114721-113936 [Arabidopsis
           thaliana] gi|54261729|gb|AAV31168.1| At3g10400
           [Arabidopsis thaliana] gi|61656137|gb|AAX49371.1|
           At3g10400 [Arabidopsis thaliana]
           gi|332641379|gb|AEE74900.1| small nuclear
           ribonucleoprotein 31 kDa protein [Arabidopsis thaliana]
          Length = 261

 Score =  199 bits (505), Expect = 5e-49
 Identities = 97/166 (58%), Positives = 121/166 (72%), Gaps = 12/166 (7%)
 Frame = -1

Query: 638 YDSEEEDETLYHRYXXXXXXXXXXXXXXXXXXL------------APSKSTVYVSNLDYT 495
           +  +EED+T Y+RY                               APSKST+YVSNLD++
Sbjct: 8   HSDDEEDDTFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFS 67

Query: 494 LTNSDLFTIFSTFGKVAKVTILKDRKTRRSRGVAFVLYVSKEDAVKAVKGMEGKVLNKRS 315
           LTNSD+ T+FSTFGKVA+VT+LKDR TR+SRGVAFVLYVS+EDA KA + M+ K+LN R 
Sbjct: 68  LTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRK 127

Query: 314 LRVSIATDNGRAAEFIRRKVYKDKSKCYECGEDGHLSYECPRNMLG 177
           L VSIA DNGRA+EFI+++VYKDKS+CYECG++GHLSYECP+N LG
Sbjct: 128 LTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLG 173


>ref|XP_002882666.1| hypothetical protein ARALYDRAFT_897216 [Arabidopsis lyrata subsp.
           lyrata] gi|297328506|gb|EFH58925.1| hypothetical protein
           ARALYDRAFT_897216 [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  198 bits (503), Expect = 9e-49
 Identities = 97/163 (59%), Positives = 120/163 (73%), Gaps = 12/163 (7%)
 Frame = -1

Query: 629 EEEDETLYHRYXXXXXXXXXXXXXXXXXXL------------APSKSTVYVSNLDYTLTN 486
           +EED+T Y+RY                               APSKST+YVSNLD++LTN
Sbjct: 11  DEEDDTFYYRYSSVAAPPPSNPRQPSSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTN 70

Query: 485 SDLFTIFSTFGKVAKVTILKDRKTRRSRGVAFVLYVSKEDAVKAVKGMEGKVLNKRSLRV 306
           SD+ T+FSTFGKVA+VT+LKDR TR+SRGVAFVLYVS+EDA KA + M+ K+LN R L V
Sbjct: 71  SDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTV 130

Query: 305 SIATDNGRAAEFIRRKVYKDKSKCYECGEDGHLSYECPRNMLG 177
           SIA DNGRA+EFI+++VYKDKS+CYECG++GHLSYECP+N LG
Sbjct: 131 SIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLG 173


>ref|XP_002529595.1| RNA binding motif protein, putative [Ricinus communis]
           gi|223530928|gb|EEF32787.1| RNA binding motif protein,
           putative [Ricinus communis]
          Length = 217

 Score =  195 bits (496), Expect = 6e-48
 Identities = 95/167 (56%), Positives = 125/167 (74%), Gaps = 7/167 (4%)
 Frame = -1

Query: 656 MVKPEKYDSEEEDETLYHRYXXXXXXXXXXXXXXXXXXL-------APSKSTVYVSNLDY 498
           MVK ++   +++D+T Y+RY                          APSKSTVYVSNLDY
Sbjct: 1   MVKNKRNRDDDDDDTFYYRYSSTSTSTLSSLNQKNPKSKSNGSGGLAPSKSTVYVSNLDY 60

Query: 497 TLTNSDLFTIFSTFGKVAKVTILKDRKTRRSRGVAFVLYVSKEDAVKAVKGMEGKVLNKR 318
           +LTNSDL T+FSTFGK+A+VT+LKD+++R+S+GVAF+ +VS++DAV A K M+ K+LN R
Sbjct: 61  SLTNSDLHTLFSTFGKIARVTVLKDKQSRQSKGVAFIQFVSRDDAVSAAKQMDKKILNGR 120

Query: 317 SLRVSIATDNGRAAEFIRRKVYKDKSKCYECGEDGHLSYECPRNMLG 177
           +L  SIA+DNGRAAEFI+++VYKDKS+CYECGE GHLSYECP+N LG
Sbjct: 121 TLSASIASDNGRAAEFIKKRVYKDKSRCYECGEIGHLSYECPKNQLG 167


>ref|XP_002315325.1| predicted protein [Populus trichocarpa] gi|222864365|gb|EEF01496.1|
           predicted protein [Populus trichocarpa]
          Length = 130

 Score =  195 bits (495), Expect = 7e-48
 Identities = 92/121 (76%), Positives = 109/121 (90%)
 Frame = -1

Query: 539 APSKSTVYVSNLDYTLTNSDLFTIFSTFGKVAKVTILKDRKTRRSRGVAFVLYVSKEDAV 360
           APSKST+YVSNLD++LTNSDL T+FSTFGKVA+VT+LKDR TR+SRGVAF+ +VS+ DAV
Sbjct: 5   APSKSTLYVSNLDFSLTNSDLHTLFSTFGKVARVTVLKDRTTRKSRGVAFIQFVSRSDAV 64

Query: 359 KAVKGMEGKVLNKRSLRVSIATDNGRAAEFIRRKVYKDKSKCYECGEDGHLSYECPRNML 180
            AV+ M+ K+LN R+L  SIA DNGRAAEFI+++VYKDKSKCYECGEDGHLSYECPRN L
Sbjct: 65  TAVEQMDKKILNGRTLSASIAADNGRAAEFIKKRVYKDKSKCYECGEDGHLSYECPRNRL 124

Query: 179 G 177
           G
Sbjct: 125 G 125