BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027862
         (297 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...    92   6e-17
emb|CBI29931.3| unnamed protein product [Vitis vinifera]               92   6e-17
ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    84   1e-14
ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containi...    84   1e-14
ref|XP_002525440.1| pentatricopeptide repeat-containing protein,...    75   6e-12

>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/87 (51%), Positives = 60/87 (68%)
 Frame = -1

Query: 261 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSDENLSFHYVDQIHAMI 82
           N ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR CS     F   +QIHA I
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITEN-VTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 81  IHYGFETDPIVCNPLIDLYSESGGISL 1
           IH+GF + P+VCNPLIDLYS++G + L
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSKNGHVDL 165


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/87 (51%), Positives = 60/87 (68%)
 Frame = -1

Query: 261 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSDENLSFHYVDQIHAMI 82
           N ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR CS     F   +QIHA I
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITEN-VTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 81  IHYGFETDPIVCNPLIDLYSESGGISL 1
           IH+GF + P+VCNPLIDLYS++G + L
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSKNGHVDL 165


>ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/85 (49%), Positives = 60/85 (70%)
 Frame = -1

Query: 261 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSDENLSFHYVDQIHAMI 82
           N ++ VF+A+K   QV  LF R+LAEG I PN  TFA VL+ C   +++F+YV Q+H+  
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 81  IHYGFETDPIVCNPLIDLYSESGGI 7
            +YGF++ P+V N LIDLYS++G I
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYI 211


>ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/85 (49%), Positives = 60/85 (70%)
 Frame = -1

Query: 261 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSDENLSFHYVDQIHAMI 82
           N ++ VF+A+K   QV  LF R+LAEG I PN  TFA VL+ C   +++F+YV Q+H+  
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 81  IHYGFETDPIVCNPLIDLYSESGGI 7
            +YGF++ P+V N LIDLYS++G I
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYI 211


>ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535253|gb|EEF36930.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 40/85 (47%), Positives = 55/85 (64%)
 Frame = -1

Query: 261 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSDENLSFHYVDQIHAMI 82
           N +LS  +A K   +VL LF +++ E  + PN  T A+VLR     N++F+YV+QIHA I
Sbjct: 157 NKVLSGLVANKTSNRVLGLFAQMVEEN-VNPNEVTVASVLRAYGSGNVAFYYVEQIHASI 215

Query: 81  IHYGFETDPIVCNPLIDLYSESGGI 7
           I  G  T  I CNPLIDLY+++G I
Sbjct: 216 ISRGLGTSSIACNPLIDLYAKNGFI 240