BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027802
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]   235   3e-60
gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gy...   234   4e-60
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   233   9e-60
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   233   9e-60
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           231   4e-59

>emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]
          Length = 1495

 Score =  235 bits (599), Expect = 3e-60
 Identities = 116/160 (72%), Positives = 136/160 (85%), Gaps = 3/160 (1%)
 Frame = +2

Query: 2    LKHGFIQRSISPWGAPVLFVKKKDGSLRLCIDFREMNKFTIHNRYPLPRIDDL---LRGA 172
            L  GFI+ S SPWGAPVLFVKKKDG+LRLCID+R++N+ T+ N+YPLPRIDDL   L+GA
Sbjct: 656  LGRGFIRPSTSPWGAPVLFVKKKDGTLRLCIDYRKLNRVTVKNKYPLPRIDDLFDQLKGA 715

Query: 173  KWFSKIDLRTGFYQLLVRKTDVSKTAFVT*YGSFEFLVMPFGLTNAPAFFMDMMNRVFRP 352
            K+FSKIDLRTG++QL VR+ DVSKTAF T YG +EFLVMPFGLTNAPA FMD+MNRVFR 
Sbjct: 716  KYFSKIDLRTGYHQLRVREEDVSKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFRA 775

Query: 353  YLDQFVIVFINDILIFSKTREEHVIHLRTALQTLREHQLY 472
            YLD FVIVF++DILI+S++ EEH  HL T L TLR HQLY
Sbjct: 776  YLDXFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLY 815


>gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
           gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa
           kafirin cluster; Ty3-Gypsy type [Oryza sativa Japonica
           Group] gi|31431495|gb|AAP53268.1| retrotransposon
           protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1230

 Score =  234 bits (598), Expect = 4e-60
 Identities = 110/158 (69%), Positives = 137/158 (86%), Gaps = 3/158 (1%)
 Frame = +2

Query: 11  GFIQRSISPWGAPVLFVKKKDGSLRLCIDFREMNKFTIHNRYPLPRIDDL---LRGAKWF 181
           GFI  S+SPWGAPVLFVKKKDGSLRLC D+RE+NK TI N+YPLPRIDDL   L+GA+ F
Sbjct: 523 GFIHPSVSPWGAPVLFVKKKDGSLRLCTDYRELNKVTIKNKYPLPRIDDLFDQLQGARVF 582

Query: 182 SKIDLRTGFYQLLVRKTDVSKTAFVT*YGSFEFLVMPFGLTNAPAFFMDMMNRVFRPYLD 361
           SKIDL++G++QL ++ +D+ KTAF   YG +E+LVMPFGLTNAPA FMD+MNR+F+PYLD
Sbjct: 583 SKIDLQSGYHQLKIKPSDIPKTAFRARYGHYEYLVMPFGLTNAPAAFMDLMNRIFKPYLD 642

Query: 362 QFVIVFINDILIFSKTREEHVIHLRTALQTLREHQLYA 475
           QFV+VFI+DILI+SKT+E+H  HLR  LQTLR+H+L+A
Sbjct: 643 QFVVVFIDDILIYSKTKEDHANHLRIVLQTLRDHKLFA 680


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  233 bits (595), Expect = 9e-60
 Identities = 112/161 (69%), Positives = 137/161 (85%), Gaps = 3/161 (1%)
 Frame = +2

Query: 2    LKHGFIQRSISPWGAPVLFVKKKDGSLRLCIDFREMNKFTIHNRYPLPRIDDL---LRGA 172
            L+ GFI+ S+SPWGAPVLFV+KKDGSLR+CID+R++NK TI N+YPLPRIDDL   L+GA
Sbjct: 688  LEKGFIRPSVSPWGAPVLFVRKKDGSLRICIDYRQLNKVTIKNKYPLPRIDDLFDQLQGA 747

Query: 173  KWFSKIDLRTGFYQLLVRKTDVSKTAFVT*YGSFEFLVMPFGLTNAPAFFMDMMNRVFRP 352
              FSKIDLR+G++QL VR+ D+ KTAF T YG +EFLVM FGLTNAPA FMD+MNRVFRP
Sbjct: 748  TCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRP 807

Query: 353  YLDQFVIVFINDILIFSKTREEHVIHLRTALQTLREHQLYA 475
            YLD FVI+FI+DILI+S+  E+H  HLRT LQTL++ +LYA
Sbjct: 808  YLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYA 848


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  233 bits (595), Expect = 9e-60
 Identities = 112/161 (69%), Positives = 137/161 (85%), Gaps = 3/161 (1%)
 Frame = +2

Query: 2    LKHGFIQRSISPWGAPVLFVKKKDGSLRLCIDFREMNKFTIHNRYPLPRIDDL---LRGA 172
            L+ GFI+ S+SPWGAPVLFV+KKDGSLR+CID+R++NK TI N+YPLPRIDDL   L+GA
Sbjct: 682  LEKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGA 741

Query: 173  KWFSKIDLRTGFYQLLVRKTDVSKTAFVT*YGSFEFLVMPFGLTNAPAFFMDMMNRVFRP 352
              FSKIDLR+G++QL VR+ D+ KTAF T YG +EFLVM FGLTNAPA FMD+MNRVFRP
Sbjct: 742  TCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRP 801

Query: 353  YLDQFVIVFINDILIFSKTREEHVIHLRTALQTLREHQLYA 475
            YLD FVI+FI+DILI+S+  E+H  HLRT LQTL++ +LYA
Sbjct: 802  YLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYA 842


>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  231 bits (590), Expect = 4e-59
 Identities = 111/161 (68%), Positives = 137/161 (85%), Gaps = 3/161 (1%)
 Frame = +2

Query: 2    LKHGFIQRSISPWGAPVLFVKKKDGSLRLCIDFREMNKFTIHNRYPLPRIDDL---LRGA 172
            L  GFI+ S+SPWGAPVLFV+KKDGSLR+CID+R++NK TI N+YPLPRIDDL   L+GA
Sbjct: 767  LDKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYPLPRIDDLFNQLQGA 826

Query: 173  KWFSKIDLRTGFYQLLVRKTDVSKTAFVT*YGSFEFLVMPFGLTNAPAFFMDMMNRVFRP 352
              FSKIDLR+G++QL VR+ D+ KTAF T YG +EFLVM FGLTNAPA FMD+MNRVF+P
Sbjct: 827  TCFSKIDLRSGYHQLRVRECDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKP 886

Query: 353  YLDQFVIVFINDILIFSKTREEHVIHLRTALQTLREHQLYA 475
            YLD FVIVFI+DIL++S+  E+H  HLRT LQTL++++LYA
Sbjct: 887  YLDTFVIVFIDDILVYSRNEEDHASHLRTVLQTLKDNKLYA 927