BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027761
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...   132   2e-29
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   125   4e-27
emb|CBI38165.3| unnamed protein product [Vitis vinifera]              121   7e-26
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   114   8e-24

>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score =  132 bits (333), Expect = 2e-29
 Identities = 58/95 (61%), Positives = 78/95 (82%)
 Frame = -2

Query: 287 MAKYGAVRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRL 108
           M+K+G V+++V DLS  DS+ FA +L  CLK+KS+RD+ ++HARIIKTQFA E+FIQNRL
Sbjct: 1   MSKHGFVKKIVGDLSFLDSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRL 60

Query: 107 IDVYAKCGCLKDSRKLFDKMPHKNTFTWNSIITAL 3
           ID Y KCGC  D+RK+FD+MP KN F+WN+I++ L
Sbjct: 61  IDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTL 95



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 26/72 (36%), Positives = 48/72 (66%)
 Frame = -2

Query: 224 FADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 45
           F   LS C   K ++  T++H  ++K+QF  ++++ + LID+Y+KCG +  ++++FD M 
Sbjct: 154 FGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMM 213

Query: 44  HKNTFTWNSIIT 9
            +N  +WNS+IT
Sbjct: 214 ERNVVSWNSLIT 225



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = -2

Query: 263 RMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKC 87
           RM+     PD    A ++S C    + +   ++HA ++K  +   ++ + N L+D+YAKC
Sbjct: 242 RMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKC 301

Query: 86  GCLKDSRKLFDKMPHKNTFTWNSIIT 9
           G + ++R +FD+MP +N  +  S+++
Sbjct: 302 GRINEARCVFDRMPIRNVVSETSMVS 327


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/95 (61%), Positives = 78/95 (82%)
 Frame = -2

Query: 287 MAKYGAVRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRL 108
           MAK+G VR++V DLS  DS+ FA +L  C+K+KS+ ++  VHARIIKTQF+SEIFIQNRL
Sbjct: 1   MAKHGLVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRL 60

Query: 107 IDVYAKCGCLKDSRKLFDKMPHKNTFTWNSIITAL 3
           +DVY KCG L+D+RK+FD M  +NTF+WN+++ AL
Sbjct: 61  VDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGAL 95



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = -2

Query: 239 PDSTLFADILSKCLKTKSIRDSTKVHARIIK-TQFASEIFIQNRLIDVYAKCGCLKDSRK 63
           PD    A + S C    +IR+  ++HAR++K  ++ +++ + N L+D+YAKC  + ++R 
Sbjct: 250 PDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 62  LFDKMPHKNTFTWNSIIT 9
           +FD+MP ++  +  S+++
Sbjct: 310 VFDRMPLRDVVSETSMVS 327



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
 Frame = -2

Query: 239 PDSTLFADILSKCLKTKSIRDSTKVHARIIKTQF------ASEIFIQNRLIDVYAKCGCL 78
           P    F ++L+ C     ++   + H  I+K  F       S+IF+ N LID+Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 77  KDSRKLFDKMPHKNTFTWNSII 12
           +D R +F++M  ++  +WN++I
Sbjct: 443 EDGRLVFERMLERDNVSWNAMI 464



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
 Frame = -2

Query: 263 RMVSDLSIPDSTL----FADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVY 96
           R V D+   D  L    F   LS C     +    ++H  I K++++ ++++ + L+D+Y
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMY 196

Query: 95  AKCGCLKDSRKLFDKMPHKNTFTWNSIIT 9
           +KC  +  +++ FD M  +N  +WNS+IT
Sbjct: 197 SKCRVVASAQRAFDDMDVRNIVSWNSLIT 225


>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/95 (61%), Positives = 74/95 (77%)
 Frame = -2

Query: 287 MAKYGAVRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRL 108
           MAK+G VR    DL +P+S+ FA +L  CL+++S R +  VHARI+ TQF+ EIFIQNRL
Sbjct: 1   MAKHGLVR----DLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRL 56

Query: 107 IDVYAKCGCLKDSRKLFDKMPHKNTFTWNSIITAL 3
           IDVY KC CL D+RKLFD+MP +NTFTWNS+I+ L
Sbjct: 57  IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVL 91



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/88 (32%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = -2

Query: 269 VRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYA 93
           VR M S L  PD    A ++S C    ++++  ++HAR++KT +F  ++ + N L+D+YA
Sbjct: 237 VRMMDSGLE-PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYA 295

Query: 92  KCGCLKDSRKLFDKMPHKNTFTWNSIIT 9
           KC  + ++R++FD+M  +N  +  S+++
Sbjct: 296 KCSKVNEARRVFDRMSIRNVVSETSMVS 323



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/72 (34%), Positives = 46/72 (63%)
 Frame = -2

Query: 224 FADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 45
           F   LS C     +   T+VHA + K+++++++++ + LID+Y+KCG +  + ++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 44  HKNTFTWNSIIT 9
            +N  TWNS+IT
Sbjct: 210 ERNLVTWNSLIT 221


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/95 (61%), Positives = 74/95 (77%)
 Frame = -2

Query: 287 MAKYGAVRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRL 108
           MAK+G VR    DL +P+S+ FA +L  CL+++S R +  VHARI+ TQF+ EIFIQNRL
Sbjct: 1   MAKHGLVR----DLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRL 56

Query: 107 IDVYAKCGCLKDSRKLFDKMPHKNTFTWNSIITAL 3
           IDVY KC CL D+RKLFD+MP +NTFTWNS+I+ L
Sbjct: 57  IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVL 91



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/88 (32%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = -2

Query: 269 VRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYA 93
           VR M S L  PD    A ++S C    ++++  ++HAR++KT +F  ++ + N L+D+YA
Sbjct: 237 VRMMDSGLE-PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYA 295

Query: 92  KCGCLKDSRKLFDKMPHKNTFTWNSIIT 9
           KC  + ++R++FD+M  +N  +  S+++
Sbjct: 296 KCSKVNEARRVFDRMSIRNVVSETSMVS 323



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/72 (34%), Positives = 46/72 (63%)
 Frame = -2

Query: 224 FADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 45
           F   LS C     +   T+VHA + K+++++++++ + LID+Y+KCG +  + ++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 44  HKNTFTWNSIIT 9
            +N  TWNS+IT
Sbjct: 210 ERNLVTWNSLIT 221



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
 Frame = -2

Query: 239 PDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFA------SEIFIQNRLIDVYAKCGCL 78
           P    F ++LS C     +    + H  ++K  F       S+IF+ N LID+Y KCG +
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 77  KDSRKLFDKMPHKNTFTWNSII 12
           +D  ++F+KM  ++  +WN+II
Sbjct: 439 EDGSRVFEKMKERDCVSWNAII 460


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  114 bits (285), Expect = 8e-24
 Identities = 49/95 (51%), Positives = 76/95 (80%)
 Frame = -2

Query: 287 MAKYGAVRRMVSDLSIPDSTLFADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRL 108
           M ++G V+++V +L   DS+ FA +L  C+++KS  D+ ++HARIIKTQF+SEIFIQNRL
Sbjct: 1   MGRHGFVQKLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRL 60

Query: 107 IDVYAKCGCLKDSRKLFDKMPHKNTFTWNSIITAL 3
           +D Y KCG  +D+RK+FD+MP +NTF++N++++ L
Sbjct: 61  VDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVL 95



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 25/77 (32%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = -2

Query: 239 PDSTLFADILSKCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRK 63
           PD    A ++S C    +IR+  ++HAR++K  ++ +++ + N L+D+YAKC  + ++R 
Sbjct: 250 PDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 62  LFDKMPHKNTFTWNSII 12
           +FD+MP +N  +  S++
Sbjct: 310 VFDRMPLRNVVSETSMV 326



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 44/72 (61%)
 Frame = -2

Query: 224 FADILSKCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 45
           F   LS C     +    ++HA I K+++  ++++ + L+D+Y+KCG +  +++ FD M 
Sbjct: 154 FGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMA 213

Query: 44  HKNTFTWNSIIT 9
            +N  +WNS+IT
Sbjct: 214 VRNIVSWNSLIT 225



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
 Frame = -2

Query: 239 PDSTLFADILSKCLKTKSIRDSTKVHARIIKTQF------ASEIFIQNRLIDVYAKCGCL 78
           P    F ++L+ C     ++   + H +I+K  F       S+IF+ N LID+Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMV 442

Query: 77  KDSRKLFDKMPHKNTFTWNSII 12
           +D   +F++M  ++  +WN++I
Sbjct: 443 EDGCLVFERMVERDVVSWNAMI 464