BLASTX nr result

ID: Coptis25_contig00027754 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027754
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310174.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_002522369.1| conserved hypothetical protein [Ricinus comm...    99   5e-19
ref|XP_002281443.1| PREDICTED: uncharacterized membrane protein ...    98   8e-19
ref|NP_001057450.2| Os06g0300500 [Oryza sativa Japonica Group] g...    72   5e-11
ref|XP_002321209.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11

>ref|XP_002310174.1| predicted protein [Populus trichocarpa] gi|222853077|gb|EEE90624.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  106 bits (264), Expect = 2e-21
 Identities = 51/90 (56%), Positives = 67/90 (74%)
 Frame = -1

Query: 275 SSTKKGLLYVIASVSLFDEYTNDFLYLREGSCFPRPTFKDTLDDDDSQLLPRKGLHEQLE 96
           +STK+GLLYVIAS S+FDEYTND LYL+EGSCFPRP ++       S LLP KGLHE+ E
Sbjct: 276 NSTKRGLLYVIASASIFDEYTNDLLYLQEGSCFPRPRYRKGA-TSSSSLLPVKGLHERFE 334

Query: 95  ALHAKQILMAGPSEKIKAVKAVVIWDNFFK 6
           A +  + L+   ++K  ++KA +IWD+FFK
Sbjct: 335 AAYVGEQLVTTTTDKATSLKAAMIWDSFFK 364


>ref|XP_002522369.1| conserved hypothetical protein [Ricinus communis]
           gi|223538447|gb|EEF40053.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 550

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/90 (51%), Positives = 64/90 (71%)
 Frame = -1

Query: 275 SSTKKGLLYVIASVSLFDEYTNDFLYLREGSCFPRPTFKDTLDDDDSQLLPRKGLHEQLE 96
           +STK+GLLYV+AS S+FDEYTND LYL++GSCFPRP ++  +    S LLP   L EQL+
Sbjct: 277 NSTKRGLLYVVASASVFDEYTNDLLYLQQGSCFPRPKYRKQV-SSTSSLLPVMRLQEQLD 335

Query: 95  ALHAKQILMAGPSEKIKAVKAVVIWDNFFK 6
           + +  +  +  P++K   +K  VIWD+FFK
Sbjct: 336 SAYVGEPFIRPPTDKANTLKTAVIWDSFFK 365


>ref|XP_002281443.1| PREDICTED: uncharacterized membrane protein At3g27390-like [Vitis
           vinifera]
          Length = 547

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -1

Query: 275 SSTKKGLLYVIASVSLFDEYTNDFLYLREGSCFPRPTFKDTLDDDDSQLLPRKGLHEQLE 96
           SS K+GLLY++AS+SLFDE TNDFLYLREGSCFPRP +   L    + L+   GL+EQ  
Sbjct: 277 SSIKRGLLYIVASMSLFDESTNDFLYLREGSCFPRPRYCKQLTYSPT-LVSVNGLNEQ-- 333

Query: 95  ALHAKQILMAGPSEKIKAVKAVVIWDNFFK 6
            LHA + L+   SEK +A+ AV+IWDN+FK
Sbjct: 334 -LHANEPLVRTASEKKRALSAVMIWDNYFK 362


>ref|NP_001057450.2| Os06g0300500 [Oryza sativa Japonica Group]
           gi|53792523|dbj|BAD53487.1| unknown protein [Oryza
           sativa Japonica Group] gi|215767015|dbj|BAG99243.1|
           unnamed protein product [Oryza sativa Japonica Group]
           gi|255676963|dbj|BAF19364.2| Os06g0300500 [Oryza sativa
           Japonica Group]
          Length = 477

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 12/102 (11%)
 Frame = -1

Query: 275 SSTKKGLLYVIASVSLFDEYTNDFLYLREGSCFPRPTFKDT------------LDDDDSQ 132
           +S + GL Y++++V+LFDEYTND LYLREGSCFPRP ++ T            + +  S 
Sbjct: 164 ASLQMGLAYMVSAVALFDEYTNDMLYLREGSCFPRPKYRKTDRMNNETGQNNEVRNATSP 223

Query: 131 LLPRKGLHEQLEALHAKQILMAGPSEKIKAVKAVVIWDNFFK 6
           L  +K  H+ ++AL   +  M    E I+ ++ + IWD  F+
Sbjct: 224 LGEKKHHHKTMKALQRSKTFM----EAIQRLRPIQIWDWLFR 261


>ref|XP_002321209.1| predicted protein [Populus trichocarpa] gi|222861982|gb|EEE99524.1|
           predicted protein [Populus trichocarpa]
          Length = 531

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
 Frame = -1

Query: 272 STKKGLLYVIASVSLFDEYTNDFLYLREGSCFPRPTFKDTLD---DDDSQLLPRK--GLH 108
           S  KGL Y++A VSLFDEY NDFLYLREGSC PRP ++ T +    +D+ L  R+   L+
Sbjct: 279 SLLKGLGYILALVSLFDEYVNDFLYLREGSCLPRPRYRKTANPKPGEDNSLKTRRENSLN 338

Query: 107 EQLEALHAKQILMAGPSEKIKAVKAVVIWDNFFK 6
            QL +  ++ +       +I+  KAV +WD  FK
Sbjct: 339 AQLISQKSRTL-----KWEIQQYKAVQVWDWLFK 367


Top