BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027562
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat...   161   6e-38
emb|CBI29414.3| unnamed protein product [Vitis vinifera]              161   6e-38
ref|XP_002521068.1| pentatricopeptide repeat-containing protein,...   159   2e-37
ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|2...   148   4e-34
ref|NP_189142.1| pentatricopeptide repeat-containing protein [Ar...   144   7e-33

>ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  161 bits (407), Expect = 6e-38
 Identities = 69/127 (54%), Positives = 102/127 (80%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G +PDS+T+T+ LKAC    D+++GE+    +V+ GY DDVFVG++++N YAKCGKMDEA
Sbjct: 100 GVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEA 159

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
           M+VF +M +RDLV WTTM+TG AQ+G++ EA+ +YR+M K+++EGDG+VM+ LIQ+C+ +
Sbjct: 160 MRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTL 219

Query: 384 GDPLLGL 404
           G   +GL
Sbjct: 220 GHSKMGL 226



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 37/122 (30%), Positives = 70/122 (57%)
 Frame = +3

Query: 36  DSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEAMKVF 215
           D       ++AC +L   K G  +  + +      DV V +SLV+ YAK G ++ A  VF
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVF 264

Query: 216 GEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKIGDPL 395
             M  +++++W+ +++G+AQ+G +  A+Q+  +MQ    + D + +VS++ +CS++G   
Sbjct: 265 RRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLK 324

Query: 396 LG 401
           LG
Sbjct: 325 LG 326



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/121 (28%), Positives = 65/121 (53%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G KPDS +    L AC+ +  +K G+ V  + V   + D V   +++++ Y+KCG +  A
Sbjct: 302 GYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFA 360

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
             VF ++S RD ++W  ++  Y   G   EA+ ++ +M++  ++ D     SL+ + S  
Sbjct: 361 RTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHS 420

Query: 384 G 386
           G
Sbjct: 421 G 421


>emb|CBI29414.3| unnamed protein product [Vitis vinifera]
          Length = 350

 Score =  161 bits (407), Expect = 6e-38
 Identities = 69/127 (54%), Positives = 102/127 (80%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G +PDS+T+T+ LKAC    D+++GE+    +V+ GY DDVFVG++++N YAKCGKMDEA
Sbjct: 100 GVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEA 159

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
           M+VF +M +RDLV WTTM+TG AQ+G++ EA+ +YR+M K+++EGDG+VM+ LIQ+C+ +
Sbjct: 160 MRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTL 219

Query: 384 GDPLLGL 404
           G   +GL
Sbjct: 220 GHSKMGL 226


>ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539637|gb|EEF41219.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 579

 Score =  159 bits (402), Expect = 2e-37
 Identities = 76/127 (59%), Positives = 99/127 (77%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G KPDS+TFT+TLKAC+SL D+  GE +   +V+ GY  DVFV SS++N YAK GKMD+A
Sbjct: 79  GIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKA 138

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
             VF +M KRD+V+WTTM+TG+AQSG+  +AI +YR MQKE+ EGDG+VMV LIQ+C+ +
Sbjct: 139 KIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSL 198

Query: 384 GDPLLGL 404
           GD   GL
Sbjct: 199 GDSKFGL 205



 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/122 (34%), Positives = 69/122 (56%)
 Frame = +3

Query: 21  SGAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDE 200
           SG KPD  +   +L ACA + ++K G+ +  H V+  Y D V  G++L++ YAKCG +  
Sbjct: 280 SGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTF 338

Query: 201 AMKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSK 380
           A  +F ++  RDL+ W  M++ Y   G   EA+ ++ +M++  I  D     SL+ +CS 
Sbjct: 339 ARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSH 398

Query: 381 IG 386
            G
Sbjct: 399 SG 400



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/122 (28%), Positives = 68/122 (55%)
 Frame = +3

Query: 36  DSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEAMKVF 215
           D       ++AC SL D K G  V  H V      D  + +SL++ YAK GK++ A +VF
Sbjct: 184 DGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVF 243

Query: 216 GEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKIGDPL 395
             +  + +++W  +++G+AQ+G + + +    EMQ    + D + ++S + +C+++G+  
Sbjct: 244 EGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLK 303

Query: 396 LG 401
           +G
Sbjct: 304 VG 305


>ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|222843523|gb|EEE81070.1|
           predicted protein [Populus trichocarpa]
          Length = 602

 Score =  148 bits (374), Expect = 4e-34
 Identities = 67/127 (52%), Positives = 96/127 (75%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G KPDS+TFT+ +KA +SL D++ GE++   +V+ GY  DVFVGSS++N Y KCGK+DEA
Sbjct: 101 GGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEA 160

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
             VF +M KRD+V W TM+TG  Q+G   EA+ ++R M+KE IEGDG++M+ L+Q+C+ +
Sbjct: 161 KLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANL 220

Query: 384 GDPLLGL 404
           G+  LGL
Sbjct: 221 GELKLGL 227



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGY-KDDVFVGSSLVNFYAKCGKMDE 200
           G + D       ++ACA+L ++K G  V  H+V      DDV + +SLV+ YAK G ++ 
Sbjct: 202 GIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLEL 261

Query: 201 AMKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSK 380
           A +VF +M +++ V+W  +++G+AQ+G +  A+ +  EMQ  + + D  V+VS + +CS+
Sbjct: 262 ASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQ 321

Query: 381 IGDPLLG 401
           +G   LG
Sbjct: 322 VGHLKLG 328



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
 Frame = +3

Query: 30  KPDSTTFTMTLKACASLSDMKTGEQVRVHSVES-GYKDDVFVGSSLVNFYAKCGKMDEAM 206
           KPD+      L AC+ +  +K G+ +  + V   G+  ++ +G++L++ YAKCG +  A 
Sbjct: 306 KPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGF--ELVLGTALIDMYAKCGSLSCAH 363

Query: 207 KVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKIG 386
            +F  +  RD++ W TM+  Y   G   E + ++ +M++  I  D     SL+ + S  G
Sbjct: 364 AIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSG 423

Query: 387 DPLLG 401
              +G
Sbjct: 424 QVDVG 428


>ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g25060, mitochondrial; Flags: Precursor
           gi|9293988|dbj|BAB01891.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643452|gb|AEE76973.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 601

 Score =  144 bits (363), Expect = 7e-33
 Identities = 68/124 (54%), Positives = 94/124 (75%)
 Frame = +3

Query: 30  KPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEAMK 209
           +PDS+TFTMT+KAC S   ++ GE V   +V+ GYK+DVFV SS++N Y KCGKMDEA  
Sbjct: 113 QPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEV 172

Query: 210 VFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKIGD 389
           +FG+M+KRD++ WTTMVTG+AQ+GKS +A++ YREMQ E    D +VM+ L+Q+   +GD
Sbjct: 173 LFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGD 232

Query: 390 PLLG 401
             +G
Sbjct: 233 TKMG 236



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/121 (29%), Positives = 64/121 (52%)
 Frame = +3

Query: 24  GAKPDSTTFTMTLKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEA 203
           G +PD  T    L AC+ +  +KTG  V  + ++    D V   ++L++ Y+KCG +  +
Sbjct: 313 GFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRV-TATALMDMYSKCGALSSS 371

Query: 204 MKVFGEMSKRDLVTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKI 383
            ++F  + ++DLV W TM++ Y   G   E + ++ +M +  IE D     SL+ + S  
Sbjct: 372 REIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHS 431

Query: 384 G 386
           G
Sbjct: 432 G 432



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/109 (33%), Positives = 64/109 (58%)
 Frame = +3

Query: 60  LKACASLSDMKTGEQVRVHSVESGYKDDVFVGSSLVNFYAKCGKMDEAMKVFGEMSKRDL 239
           L+A   L D K G  V  +   +G   +V V +SLV+ YAK G ++ A +VF  M  +  
Sbjct: 224 LQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTA 283

Query: 240 VTWTTMVTGYAQSGKSFEAIQVYREMQKEKIEGDGIVMVSLIQSCSKIG 386
           V+W ++++G+AQ+G + +A +   EMQ    + D + +V ++ +CS++G
Sbjct: 284 VSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVG 332