BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027539
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   148   4e-34
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   142   2e-32
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...   141   5e-32
gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit ...   136   2e-30
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]            136   2e-30

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  148 bits (374), Expect = 4e-34
 Identities = 75/117 (64%), Positives = 88/117 (75%)
 Frame = +2

Query: 2   NKFVVQFTLNEFANKKENDSREQEIVGHEDDIIRRVQPSERCSLEVQRPWPESGCRFMYD 181
           +KFVVQ T+N      EN   E +    +DDIIRRVQPS+RCSL V    P  GCRFMYD
Sbjct: 154 SKFVVQLTVNN-PPSAENGKNENKFENVDDDIIRRVQPSKRCSLLVHGSRPGPGCRFMYD 212

Query: 182 RIEDKFNSLENRIRRLTTAFLASGLYEESVDPTMASQKSAFSVGMISCDGEGRLNEK 352
           RIED+FNSLENRI++ TTA +A+GLY+E  DPT+ASQKS F+ GMI CDGEGRLNEK
Sbjct: 213 RIEDRFNSLENRIKKHTTALVATGLYKEPTDPTVASQKSVFATGMICCDGEGRLNEK 269


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score =  142 bits (359), Expect = 2e-32
 Identities = 70/117 (59%), Positives = 86/117 (73%)
 Frame = +2

Query: 2   NKFVVQFTLNEFANKKENDSREQEIVGHEDDIIRRVQPSERCSLEVQRPWPESGCRFMYD 181
           +KFVV+F +N   +  EN   E      EDDII+RVQP ++CS  V    PE GCRFMYD
Sbjct: 153 DKFVVKFNINNLPDT-ENGDNEHVRENMEDDIIKRVQPRKKCSFVVHGSGPEPGCRFMYD 211

Query: 182 RIEDKFNSLENRIRRLTTAFLASGLYEESVDPTMASQKSAFSVGMISCDGEGRLNEK 352
           RIED+FN+L+NRIR+   A +ASGLYEE  DPT+ASQ++ F+VGMI CDGEGRLNEK
Sbjct: 212 RIEDRFNALDNRIRKHAAALVASGLYEEPTDPTVASQRNVFAVGMICCDGEGRLNEK 268


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
           lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
           subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score =  141 bits (356), Expect = 5e-32
 Identities = 73/116 (62%), Positives = 84/116 (72%)
 Frame = +2

Query: 5   KFVVQFTLNEFANKKENDSREQEIVGHEDDIIRRVQPSERCSLEVQRPWPESGCRFMYDR 184
           KFVV+F +   A  +  +S E E    EDDII+RVQ S+RCSLEV    PE GCRFMYDR
Sbjct: 155 KFVVKFNVGNVAPAENGNSNEIE--NSEDDIIKRVQTSQRCSLEVNGSGPEPGCRFMYDR 212

Query: 185 IEDKFNSLENRIRRLTTAFLASGLYEESVDPTMASQKSAFSVGMISCDGEGRLNEK 352
            ED+FN LENRI R   AF ASGLYEE VDP +ASQ+S F+VGMI CDGEG LN+K
Sbjct: 213 TEDRFNVLENRIVRHADAFAASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDK 268


>gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit [Arabidopsis thaliana]
          Length = 620

 Score =  136 bits (343), Expect = 2e-30
 Identities = 69/116 (59%), Positives = 84/116 (72%)
 Frame = +2

Query: 5   KFVVQFTLNEFANKKENDSREQEIVGHEDDIIRRVQPSERCSLEVQRPWPESGCRFMYDR 184
           KFVV+F +   A   EN +   ++   EDDII+RVQ S+RCSL+V    PE GCRFMYDR
Sbjct: 155 KFVVKFNVGNVAAHAENGNNN-DVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDR 213

Query: 185 IEDKFNSLENRIRRLTTAFLASGLYEESVDPTMASQKSAFSVGMISCDGEGRLNEK 352
            ED+F++LE RI R   AF ASGLYEE VDP +ASQ+S F+VGMI CDGEG LN+K
Sbjct: 214 TEDRFSALEYRIVRHADAFAASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDK 269


>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
          Length = 803

 Score =  136 bits (343), Expect = 2e-30
 Identities = 69/116 (59%), Positives = 84/116 (72%)
 Frame = +2

Query: 5   KFVVQFTLNEFANKKENDSREQEIVGHEDDIIRRVQPSERCSLEVQRPWPESGCRFMYDR 184
           KFVV+F +   A   EN +   ++   EDDII+RVQ S+RCSL+V    PE GCRFMYDR
Sbjct: 155 KFVVKFNVGNVAAHAENGNNN-DVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDR 213

Query: 185 IEDKFNSLENRIRRLTTAFLASGLYEESVDPTMASQKSAFSVGMISCDGEGRLNEK 352
            ED+F++LE RI R   AF ASGLYEE VDP +ASQ+S F+VGMI CDGEG LN+K
Sbjct: 214 TEDRFSALEYRIVRHADAFAASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDK 269