BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027444
         (495 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20322.3| unnamed protein product [Vitis vinifera]              137   7e-31
ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31
ref|XP_002527601.1| pentatricopeptide repeat-containing protein,...   123   1e-26
ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]   120   1e-25

>emb|CBI20322.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  137 bits (346), Expect = 7e-31
 Identities = 66/115 (57%), Positives = 90/115 (78%)
 Frame = -3

Query: 493 AAGYVEKDEMEKALGCMKKAFSVNKSDGGWKPNSTVISSLLHWLGDTCEVKEVEDFVRSL 314
           AAGY+EK  MEKA  CMK+A +V   + GW+P   VISS+L WLGD  +V+EVE FV +L
Sbjct: 390 AAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSAL 449

Query: 313 KDLIPINKDVYYALIKANVREGKDVDGILESMKANKIDLDEEIGKVLSLKEEGAE 149
           K +IP+++++Y+A I+A++R GK+VDGIL+SMKA+KID DEE  K+LSLK + AE
Sbjct: 450 KAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKAE 504


>ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial [Vitis vinifera]
          Length = 504

 Score =  137 bits (346), Expect = 7e-31
 Identities = 66/115 (57%), Positives = 90/115 (78%)
 Frame = -3

Query: 493 AAGYVEKDEMEKALGCMKKAFSVNKSDGGWKPNSTVISSLLHWLGDTCEVKEVEDFVRSL 314
           AAGY+EK  MEKA  CMK+A +V   + GW+P   VISS+L WLGD  +V+EVE FV +L
Sbjct: 390 AAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSAL 449

Query: 313 KDLIPINKDVYYALIKANVREGKDVDGILESMKANKIDLDEEIGKVLSLKEEGAE 149
           K +IP+++++Y+A I+A++R GK+VDGIL+SMKA+KID DEE  K+LSLK + AE
Sbjct: 450 KAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKAE 504


>ref|XP_002527601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533018|gb|EEF34782.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 502

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/115 (50%), Positives = 82/115 (71%)
 Frame = -3

Query: 493 AAGYVEKDEMEKALGCMKKAFSVNKSDGGWKPNSTVISSLLHWLGDTCEVKEVEDFVRSL 314
           AAGYV K  MEKA  CMK+A +V   + GW+P + +ISS+L WLG+  +V++VE FV  L
Sbjct: 388 AAGYVNKQNMEKAFNCMKEALTVQAENKGWRPKANLISSILSWLGENGDVEDVEAFVNLL 447

Query: 313 KDLIPINKDVYYALIKANVREGKDVDGILESMKANKIDLDEEIGKVLSLKEEGAE 149
           +  +P ++++Y+ LIKA +R GK VDG+LE+M ANKID DEE   +LSL+ +  E
Sbjct: 448 ETKVPKDREIYHTLIKAYIRGGKQVDGVLENMTANKIDEDEETKTILSLRLKDVE 502


>ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/111 (53%), Positives = 84/111 (75%)
 Frame = -3

Query: 493 AAGYVEKDEMEKALGCMKKAFSVNKSDGGWKPNSTVISSLLHWLGDTCEVKEVEDFVRSL 314
           A+GY+++ EMEKA+ CMK A S++ ++ G KPNS VI+ +L WLGD   V++VE FV SL
Sbjct: 393 ASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSL 452

Query: 313 KDLIPINKDVYYALIKANVREGKDVDGILESMKANKIDLDEEIGKVLSLKE 161
           + +IP+N+ +Y+ LI AN+R GK+VDG+L SMKA+KI  DEE  K+L  K+
Sbjct: 453 RIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKILGTKQ 503


>emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
          Length = 506

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/111 (53%), Positives = 84/111 (75%)
 Frame = -3

Query: 493 AAGYVEKDEMEKALGCMKKAFSVNKSDGGWKPNSTVISSLLHWLGDTCEVKEVEDFVRSL 314
           A+GY+++ EMEKA+ CMK A S++ ++ G KPNS VI+ +L WLGD   V++VE FV SL
Sbjct: 393 ASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSL 452

Query: 313 KDLIPINKDVYYALIKANVREGKDVDGILESMKANKIDLDEEIGKVLSLKE 161
           + +IP+N+ +Y+ LI AN+R GK+VDG+L SMKA+KI  DEE  K+L  K+
Sbjct: 453 RIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKILGTKQ 503