BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027427
         (649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22748.3| unnamed protein product [Vitis vinifera]              185   6e-45
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   185   6e-45
ref|XP_002894516.1| pentatricopeptide repeat-containing protein ...   159   3e-37
ref|XP_002321918.1| predicted protein [Populus trichocarpa] gi|2...   159   3e-37
gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]              159   4e-37

>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  185 bits (470), Expect = 6e-45
 Identities = 84/107 (78%), Positives = 98/107 (91%)
 Frame = -1

Query: 649 GYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIRGLCAARKFDEARSMLREMESRGCNP 470
           GY+VAGE E AQ +F+EMT+KGQLPNV+TYN+MIRGLC A KF+EARSML+EMESRGCNP
Sbjct: 412 GYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNP 471

Query: 469 NFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYIHLLAKFKGYRRC 329
           NF+VY+TLV NL+NAGKL EAHE+I  MVDKGQY+HLL+KFKGYRRC
Sbjct: 472 NFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 518


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  185 bits (470), Expect = 6e-45
 Identities = 84/107 (78%), Positives = 98/107 (91%)
 Frame = -1

Query: 649 GYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIRGLCAARKFDEARSMLREMESRGCNP 470
           GY+VAGE E AQ +F+EMT+KGQLPNV+TYN+MIRGLC A KF+EARSML+EMESRGCNP
Sbjct: 408 GYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNP 467

Query: 469 NFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYIHLLAKFKGYRRC 329
           NF+VY+TLV NL+NAGKL EAHE+I  MVDKGQY+HLL+KFKGYRRC
Sbjct: 468 NFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 514


>ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297340358|gb|EFH70775.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 477

 Score =  159 bits (403), Expect = 3e-37
 Identities = 74/106 (69%), Positives = 88/106 (83%)
 Frame = -1

Query: 649 GYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIRGLCAARKFDEARSMLREMESRGCNP 470
           GY+  GE EKA+ MF EMT KGQLPNV+TYN+MIRG C A KF EA S+L+EMESRGCNP
Sbjct: 371 GYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNP 430

Query: 469 NFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYIHLLAKFKGYRR 332
           NF+VYSTLV NL+NAGK+ EAHEI+  MV+KG Y+HL++ FK YRR
Sbjct: 431 NFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKGHYVHLISMFKKYRR 476


>ref|XP_002321918.1| predicted protein [Populus trichocarpa] gi|222868914|gb|EEF06045.1|
           predicted protein [Populus trichocarpa]
          Length = 159

 Score =  159 bits (403), Expect = 3e-37
 Identities = 74/106 (69%), Positives = 89/106 (83%)
 Frame = -1

Query: 649 GYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIRGLCAARKFDEARSMLREMESRGCNP 470
           GY++ GE EKAQ MF++M + GQLPNV+TYN+MIRGLC A KF+EA SML+EMESRGCNP
Sbjct: 54  GYIMNGELEKAQEMFEDMIVNGQLPNVFTYNSMIRGLCMAGKFEEACSMLKEMESRGCNP 113

Query: 469 NFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYIHLLAKFKGYRR 332
           NF VY TLV NL+NAGKLSEAHE+I QM++K QY HL+ K K Y+R
Sbjct: 114 NFHVYRTLVRNLRNAGKLSEAHEVIKQMIEKSQYSHLVTKIKRYKR 159


>gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  159 bits (402), Expect = 4e-37
 Identities = 73/106 (68%), Positives = 88/106 (83%)
 Frame = -1

Query: 649 GYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIRGLCAARKFDEARSMLREMESRGCNP 470
           GY+  GE EKA+ MF EMT KGQLPNV+TYN+MIRG C A KF EA ++L+EMESRGCNP
Sbjct: 448 GYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNP 507

Query: 469 NFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYIHLLAKFKGYRR 332
           NF+VYSTLV NLKNAGK+ EAHE++  MV+KG Y+HL++K K YRR
Sbjct: 508 NFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHYVHLISKLKKYRR 553