BLASTX nr result
ID: Coptis25_contig00027421
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00027421 (821 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 86 1e-14 pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 79 2e-12 gb|AAO00713.1| retrotransposon protein, putative, unclassified [... 76 1e-11 emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 76 1e-11 gb|AAP54692.2| retrotransposon protein, putative, unclassified [... 76 1e-11 >emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana] gi|7267666|emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana] Length = 1274 Score = 85.9 bits (211), Expect = 1e-14 Identities = 74/267 (27%), Positives = 120/267 (44%), Gaps = 5/267 (1%) Frame = +2 Query: 2 WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181 WSIG+G + V ++ WLS + I P + ++L V DL+ D W+ I Sbjct: 859 WSIGQGDSINVWTEAWLSPSSPQTPIG---PPTETNKDLSVHDLICHDVKSWNVEAIRKH 915 Query: 182 FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEHSSSFNFNII 361 P + I+++ I L +D++ + ++G + K+ Y N +S +FN Sbjct: 916 LPQ-YEDQIRKITINAL-PLQDSLVWLPVKSGEYTTKTGYALAKLNSFP--ASQLDFNWQ 971 Query: 362 KTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIFFKCKW 541 K IWK FL K G LP G+ L RR I+ E TC C + + +H+ C + Sbjct: 972 KNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPY 1030 Query: 542 SKSVWFASNLGGKLDELGHYTIRD*VDLLVQWTKEVDPGIAEKGSLALL--ILQGIWETR 715 +K VW + + E H ++ LLV + V GS L +L +W+ R Sbjct: 1031 AKKVWELAPVLFNPSEATHSSV---ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKAR 1087 Query: 716 NKTTFEGITSNREGLLRRT---ATQWM 787 N+ F+ + + EGL+ + A WM Sbjct: 1088 NRLIFDNHSCSEEGLVLKAILDARAWM 1114 >pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana (fragment) Length = 1365 Score = 78.6 bits (192), Expect = 2e-12 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 9/252 (3%) Frame = +2 Query: 8 IGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHLFP 187 IG G+ V + WL + +N + DL KV L+ W+ + LFP Sbjct: 925 IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDL---KVSQLIDPTSRNWNLNMLRDLFP 981 Query: 188 -STIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQ--------RMVGNGGMEHSS 340 + ++KQ RPLF ++D+ + + NG+ S+K+ Y+ R+ ++ S Sbjct: 982 WKDVEIILKQ---RPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSV 1038 Query: 341 SFNFNIIKTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIH 520 + F+ IW +FL K G +P D LR RGI+ + C +C E + H Sbjct: 1039 NSLFD---KIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINH 1095 Query: 521 IFFKCKWSKSVWFASNLGGKLDELGHYTIRD*VDLLVQWTKEVDPGIAEKGSLALLILQG 700 I F+C ++ VW ++L E + ++ + L+ T++ D ++ IL Sbjct: 1096 ILFECPLARQVWAITHLSSAGSEFSN-SVYTNMSRLIDLTQQNDLP-HHLRFVSPWILWF 1153 Query: 701 IWETRNKTTFEG 736 +W+ RN FEG Sbjct: 1154 LWKNRNALLFEG 1165 >gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1557 Score = 75.9 bits (185), Expect = 1e-11 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 5/192 (2%) Frame = +2 Query: 2 WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181 W IG G+ V V PWL + L + + + + V DLML +G WD +I+ + Sbjct: 1293 WRIGNGRSVRVWQDPWLPRD----LSRRPITPKNNCRIKWVADLMLDNGM-WDANKINQI 1347 Query: 182 FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEH--SSSFNFN 355 F +I ++ +D I + G S+++AY R+ N E SSS + N Sbjct: 1348 FLPVDVEIILKLRTSSR-DEEDFIAWHPDKLGNFSVRTAY-RLAENWAKEEASSSSSDVN 1405 Query: 356 IIKT---IWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIF 526 I K +WK VP+ +F + LPT D ++R ++ TC +C ME++D +H Sbjct: 1406 IRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHAL 1465 Query: 527 FKCKWSKSVWFA 562 +C +K +W A Sbjct: 1466 CRCPQAKHLWLA 1477 >emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1357 Score = 75.9 bits (185), Expect = 1e-11 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 9/253 (3%) Frame = +2 Query: 2 WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVK-DLMLTDGSGWDEYRIDH 178 W +G G + + S PW+ + + + + + L+V DLM + W+ I+ Sbjct: 931 WRVGDGTKIDIWSAPWVGDEEGRFIKSARV------EGLEVVGDLMDVERKEWNVELIER 984 Query: 179 LFPSTIGNLIKQVMIRPLFAR--KDTIR*MDTRNGILSIKSAYQRMVGNGGMEHSSSFNF 352 F I + PL R +D + +++G S+K+AY M+G GG + Sbjct: 985 HFNERDQQCILAI---PLSTRCLQDELTWAYSKDGTYSVKTAY--MLGKGGNLDDFHRVW 1039 Query: 353 NIIKTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIFFK 532 NI+ W V FL + LP +L+RR + E CP C E + H+F++ Sbjct: 1040 NIL---WSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYR 1096 Query: 533 CKWSKSVWFASNLGGKLDELGHYTIRD*V------DLLVQWTKEVDPGIAEKGSLALLIL 694 C S +W +ELG Y + + D LV+W+ ++D + +KG IL Sbjct: 1097 CPMSLKLW---------EELGSYILLPGIEDEAMCDTLVRWS-QMDAKVVQKG---CYIL 1143 Query: 695 QGIWETRNKTTFE 733 +W RN+ FE Sbjct: 1144 WNVWVERNRRVFE 1156 >gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1585 Score = 75.9 bits (185), Expect = 1e-11 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 5/192 (2%) Frame = +2 Query: 2 WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181 W IG G+ V V PWL + L + + + + V DLML +G WD +I+ + Sbjct: 1321 WRIGNGRSVRVWQDPWLPRD----LSRRPITPKNNCRIKWVADLMLDNGM-WDANKINQI 1375 Query: 182 FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEH--SSSFNFN 355 F +I ++ +D I + G S+++AY R+ N E SSS + N Sbjct: 1376 FLPVDVEIILKLRTSSR-DEEDFIAWHPDKLGNFSVRTAY-RLAENWAKEEASSSSSDVN 1433 Query: 356 IIKT---IWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIF 526 I K +WK VP+ +F + LPT D ++R ++ TC +C ME++D +H Sbjct: 1434 IRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHAL 1493 Query: 527 FKCKWSKSVWFA 562 +C +K +W A Sbjct: 1494 CRCPQAKHLWLA 1505