BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027421
         (821 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    86   1e-14
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    79   2e-12
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    76   1e-11
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    76   1e-11
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    76   1e-11

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 74/267 (27%), Positives = 120/267 (44%), Gaps = 5/267 (1%)
 Frame = +2

Query: 2    WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181
            WSIG+G  + V ++ WLS +     I    P  +  ++L V DL+  D   W+   I   
Sbjct: 859  WSIGQGDSINVWTEAWLSPSSPQTPIG---PPTETNKDLSVHDLICHDVKSWNVEAIRKH 915

Query: 182  FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEHSSSFNFNII 361
             P    + I+++ I  L   +D++  +  ++G  + K+ Y     N     +S  +FN  
Sbjct: 916  LPQ-YEDQIRKITINAL-PLQDSLVWLPVKSGEYTTKTGYALAKLNSFP--ASQLDFNWQ 971

Query: 362  KTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIFFKCKW 541
            K IWK         FL K   G LP G+ L RR I+ E TC  C  + +  +H+   C +
Sbjct: 972  KNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPY 1030

Query: 542  SKSVWFASNLGGKLDELGHYTIRD*VDLLVQWTKEVDPGIAEKGSLALL--ILQGIWETR 715
            +K VW  + +     E  H ++     LLV   + V       GS  L   +L  +W+ R
Sbjct: 1031 AKKVWELAPVLFNPSEATHSSV---ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKAR 1087

Query: 716  NKTTFEGITSNREGLLRRT---ATQWM 787
            N+  F+  + + EGL+ +    A  WM
Sbjct: 1088 NRLIFDNHSCSEEGLVLKAILDARAWM 1114


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 9/252 (3%)
 Frame = +2

Query: 8    IGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHLFP 187
            IG G+   V +  WL    +   +N    +  DL   KV  L+      W+   +  LFP
Sbjct: 925  IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDL---KVSQLIDPTSRNWNLNMLRDLFP 981

Query: 188  -STIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQ--------RMVGNGGMEHSS 340
               +  ++KQ   RPLF ++D+   + + NG+ S+K+ Y+        R+     ++ S 
Sbjct: 982  WKDVEIILKQ---RPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSV 1038

Query: 341  SFNFNIIKTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIH 520
            +  F+    IW         +FL K   G +P  D LR RGI+ +  C +C  E +   H
Sbjct: 1039 NSLFD---KIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINH 1095

Query: 521  IFFKCKWSKSVWFASNLGGKLDELGHYTIRD*VDLLVQWTKEVDPGIAEKGSLALLILQG 700
            I F+C  ++ VW  ++L     E  + ++   +  L+  T++ D        ++  IL  
Sbjct: 1096 ILFECPLARQVWAITHLSSAGSEFSN-SVYTNMSRLIDLTQQNDLP-HHLRFVSPWILWF 1153

Query: 701  IWETRNKTTFEG 736
            +W+ RN   FEG
Sbjct: 1154 LWKNRNALLFEG 1165


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 5/192 (2%)
 Frame = +2

Query: 2    WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181
            W IG G+ V V   PWL  +    L    +  + + +   V DLML +G  WD  +I+ +
Sbjct: 1293 WRIGNGRSVRVWQDPWLPRD----LSRRPITPKNNCRIKWVADLMLDNGM-WDANKINQI 1347

Query: 182  FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEH--SSSFNFN 355
            F      +I ++        +D I     + G  S+++AY R+  N   E   SSS + N
Sbjct: 1348 FLPVDVEIILKLRTSSR-DEEDFIAWHPDKLGNFSVRTAY-RLAENWAKEEASSSSSDVN 1405

Query: 356  IIKT---IWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIF 526
            I K    +WK  VP+   +F  +     LPT D  ++R ++   TC +C ME++D +H  
Sbjct: 1406 IRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHAL 1465

Query: 527  FKCKWSKSVWFA 562
             +C  +K +W A
Sbjct: 1466 CRCPQAKHLWLA 1477


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 9/253 (3%)
 Frame = +2

Query: 2    WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVK-DLMLTDGSGWDEYRIDH 178
            W +G G  + + S PW+   +   + +  +      + L+V  DLM  +   W+   I+ 
Sbjct: 931  WRVGDGTKIDIWSAPWVGDEEGRFIKSARV------EGLEVVGDLMDVERKEWNVELIER 984

Query: 179  LFPSTIGNLIKQVMIRPLFAR--KDTIR*MDTRNGILSIKSAYQRMVGNGGMEHSSSFNF 352
             F       I  +   PL  R  +D +    +++G  S+K+AY  M+G GG        +
Sbjct: 985  HFNERDQQCILAI---PLSTRCLQDELTWAYSKDGTYSVKTAY--MLGKGGNLDDFHRVW 1039

Query: 353  NIIKTIWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIFFK 532
            NI+   W   V      FL +     LP   +L+RR +  E  CP C  E +   H+F++
Sbjct: 1040 NIL---WSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYR 1096

Query: 533  CKWSKSVWFASNLGGKLDELGHYTIRD*V------DLLVQWTKEVDPGIAEKGSLALLIL 694
            C  S  +W         +ELG Y +   +      D LV+W+ ++D  + +KG     IL
Sbjct: 1097 CPMSLKLW---------EELGSYILLPGIEDEAMCDTLVRWS-QMDAKVVQKG---CYIL 1143

Query: 695  QGIWETRNKTTFE 733
              +W  RN+  FE
Sbjct: 1144 WNVWVERNRRVFE 1156


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 5/192 (2%)
 Frame = +2

Query: 2    WSIGKGKDVLVMSQPWLSINKHLVLINDMMPLRQDLQNLKVKDLMLTDGSGWDEYRIDHL 181
            W IG G+ V V   PWL  +    L    +  + + +   V DLML +G  WD  +I+ +
Sbjct: 1321 WRIGNGRSVRVWQDPWLPRD----LSRRPITPKNNCRIKWVADLMLDNGM-WDANKINQI 1375

Query: 182  FPSTIGNLIKQVMIRPLFARKDTIR*MDTRNGILSIKSAYQRMVGNGGMEH--SSSFNFN 355
            F      +I ++        +D I     + G  S+++AY R+  N   E   SSS + N
Sbjct: 1376 FLPVDVEIILKLRTSSR-DEEDFIAWHPDKLGNFSVRTAY-RLAENWAKEEASSSSSDVN 1433

Query: 356  IIKT---IWKAPVPANTLLFL*KLYMGILPTGDLLRRRGIKGEFTCPLCWMEQKDPIHIF 526
            I K    +WK  VP+   +F  +     LPT D  ++R ++   TC +C ME++D +H  
Sbjct: 1434 IRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHAL 1493

Query: 527  FKCKWSKSVWFA 562
             +C  +K +W A
Sbjct: 1494 CRCPQAKHLWLA 1505