BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027375
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-16
emb|CBI36755.3| unnamed protein product [Vitis vinifera]               86   3e-15
ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat...    86   3e-15
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...    86   3e-15
dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]            84   9e-15

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
 Frame = -1

Query: 384 PTKEEWLYTSLKSPKT-PTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLF 208
           P  ++ L T L+S  + P+ LK LHA ++ TGL+  + +  QL    ++   M+YAR LF
Sbjct: 33  PITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLF 92

Query: 207 DKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIH 28
           D++H P+ F +N ++KGY  N     A+++Y  MR+  V  D FTFP V+++ + L ++ 
Sbjct: 93  DEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELW 152

Query: 27  IGKELHGLV 1
            G  +HG V
Sbjct: 153 AGLGMHGHV 161


>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 42/120 (35%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
 Frame = -1

Query: 354 LKSPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNT--MNYARHLFDKLHHPKLF 181
           L+  KT  +LK LH  +I T + Q+ +   +L   C+ S++  +NYA+ +F+++  P L+
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71

Query: 180 FYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGKELHGLV 1
            +N+MIKGYS+++   +ALT+Y  MR +    D FTFP VL++ S +   ++G+ +H  +
Sbjct: 72  IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCI 131


>ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 42/120 (35%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
 Frame = -1

Query: 354 LKSPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNT--MNYARHLFDKLHHPKLF 181
           L+  KT  +LK LH  +I T + Q+ +   +L   C+ S++  +NYA+ +F+++  P L+
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71

Query: 180 FYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGKELHGLV 1
            +N+MIKGYS+++   +ALT+Y  MR +    D FTFP VL++ S +   ++G+ +H  +
Sbjct: 72  IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCI 131


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/116 (37%), Positives = 65/116 (56%)
 Frame = -1

Query: 348 SPKTPTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLFDKLHHPKLFFYNA 169
           S   P QLK +HA +++TG ++ + +  QL     +   M YAR +FD++H P++F +N 
Sbjct: 20  SSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNT 79

Query: 168 MIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGKELHGLV 1
           + KGY  N    ++L LY  MR   V  D FT+P V+++ S LG    G  LH  V
Sbjct: 80  LFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHV 135


>dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
 Frame = -1

Query: 363 YTSLKSPKT-PTQLKTLHAQIIKTGLTQNDLVFGQLFLCCSISNTMNYARHLFDKLHHPK 187
           Y SL    T   QLK +HA+++  GL  +  +  +L    S    + +AR +FD L  P+
Sbjct: 24  YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQ 83

Query: 186 LFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVTCDSFTFPVVLRSASTLGKIHIGKELHG 7
           +F +NA+I+GYS N+  QDAL +Y+ M+   V+ DSFTFP +L++ S L  + +G+ +H 
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 6   LV 1
            V
Sbjct: 144 QV 145