BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027372
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   467   e-129
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   449   e-124
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   445   e-123
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   426   e-117
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...   421   e-115

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  467 bits (1202), Expect = e-129
 Identities = 228/295 (77%), Positives = 261/295 (88%), Gaps = 2/295 (0%)
 Frame = -2

Query: 880 QTNFQEEQNPTPLSNQLKPISLTLLTDTNSPS--LLSKPKSTWVNPSKPKRSVLSLHRHK 707
           QTN    QNP+ LS QLKP+S T+LT  +S    L+SKPKSTW+NP+KPK SVLSL RHK
Sbjct: 67  QTN---HQNPS-LSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQRHK 122

Query: 706 KDTYTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTRENALLILNSLRPWQKT 527
           +  Y+ NP++ DL++F+KK+N  + S E+EFLAVLE IPHPPTR+NALL+LNSL+PW KT
Sbjct: 123 RHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWPKT 182

Query: 526 LCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIIT 347
             FF W+K QN+FP+ETIFYNV MKSLRFGRQF +IE+LANEMI   +ELDNITYSTIIT
Sbjct: 183 YLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIIT 242

Query: 346 CAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKP 167
           CAKRCN+FDKAV+WFERMYKTGLMPDEVTYSA+LDVYAKLGKVEEVLSLYE+GRASGWKP
Sbjct: 243 CAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKP 302

Query: 166 DPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGL 2
           DPIAF+VLGKMFGEAGDYDGIRYVLQEMKS+GV+PNLVVYNTLLEAMGKAGKPGL
Sbjct: 303 DPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 357



 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
 Frame = -2

Query: 508 LKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCN 329
           +K+  V P   + YN +++++    +  +   L  EM+ + +  D  T + ++    +  
Sbjct: 330 MKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKAR 388

Query: 328 MFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRAS-GWKPDPIAF 152
               A+E +ERM   G   D + Y+ +L + A LG  EE   L+E  + S   +PD  ++
Sbjct: 389 WARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSY 448

Query: 151 SVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKA 17
           + +  ++G  G+ D    +  EM  +GV+ N++    L + +G+A
Sbjct: 449 TAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRA 493



 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
 Frame = -2

Query: 421 IEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLD 242
           I  +  EM    ++ + + Y+T++    +      A   FE M  +G++PD  T +A++ 
Sbjct: 323 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVK 382

Query: 241 VYAKLGKVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEM-KSVGVE 65
           +Y K     + L L+E+ R++GW  D I ++ L  M  + G  +    + ++M KS    
Sbjct: 383 IYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCR 442

Query: 64  PNLVVYNTLLEAMGKAG 14
           P+   Y  +L   G  G
Sbjct: 443 PDSWSYTAMLNIYGSGG 459


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score =  449 bits (1154), Expect = e-124
 Identities = 238/356 (66%), Positives = 272/356 (76%), Gaps = 20/356 (5%)
 Frame = -2

Query: 1009 MAASSILSTSILDL----HNSKNKPI-FHFSSPFXXXXXXXXXXXXXS------QTNFQE 863
            MAA+S+ +     L    H+ K KPI F  SSP              +      +T+   
Sbjct: 1    MAAASLSAAPDFHLTITHHSDKKKPILFTSSSPITITHNNNPYRRRLTISCNSRKTSKHL 60

Query: 862  EQNPTP----LSNQLKPISLTLL-----TDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRH 710
             ++P P    LS+QLKP+S T L     T T   SLLSKP STWVNP+KPKRSVLSL R 
Sbjct: 61   SESPNPKNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQ 120

Query: 709  KKDTYTQNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTRENALLILNSLRPWQK 530
            K+  Y+ NPK+ +LR+F++KLN CD S E+ FL++LE IP+P TRENALLILNSLRPWQK
Sbjct: 121  KRSPYSLNPKVKELRLFAQKLNDCD-STESSFLSLLEQIPYPLTRENALLILNSLRPWQK 179

Query: 529  TLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTII 350
               FF W+K QN FPVETIFYNV MKSLRFGRQF +I+KLANEM+ N IELDNITYSTII
Sbjct: 180  AHLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTII 239

Query: 349  TCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWK 170
            TCAKRCN FD A+EWFERMYKTGLMPDEVTYSA+LDVYAKLG+VEEVLSLYE+G ASGWK
Sbjct: 240  TCAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWK 299

Query: 169  PDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGL 2
            PDPI FSVL KMFGEAGDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMGKAGKPGL
Sbjct: 300  PDPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGL 355


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  445 bits (1144), Expect = e-123
 Identities = 216/289 (74%), Positives = 249/289 (86%), Gaps = 2/289 (0%)
 Frame = -2

Query: 865 EEQNPTPLSNQLKPISLTLLTDT--NSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYT 692
           + +NP+ LS QLK +S T L++   +   LLSKPKSTWVNP+KPKRSVLSL R K+ +Y+
Sbjct: 55  DNKNPS-LSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYS 113

Query: 691 QNPKLNDLRMFSKKLNACDPSHENEFLAVLEDIPHPPTRENALLILNSLRPWQKTLCFFT 512
            NPK+ DL+ F+ KLNACD S +  F+A LE+IPHPPT+ENALLILNSLRPWQKT  FF 
Sbjct: 114 YNPKMRDLKSFAHKLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKTHLFFN 173

Query: 511 WLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRC 332
           W+K+QN+FP+ETIFYNV MKSLR+GRQF +IE LANEMI   IELDNITYSTIITCAK+C
Sbjct: 174 WIKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKC 233

Query: 331 NMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKPDPIAF 152
           + FDKA+EWFERMYKTGLMPDEVTYSA+LDVYA LGKVEEVLSLYE+GRASGW PDP  F
Sbjct: 234 SRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTF 293

Query: 151 SVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPG 5
           SVLGKMFGEAGDYDGI YVLQEMKS+ ++PNLVVYNTLL+AMGKAGKPG
Sbjct: 294 SVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPG 342



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
 Frame = -2

Query: 475 IFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEWFER 296
           + YN ++ ++    +      L +EM+E+ I  +  T + ++    +      A++ +ER
Sbjct: 326 VVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWER 385

Query: 295 MYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW-KPDPIAFSVLGKMFGEAG 119
           M   G   D + Y+ +L++ A LG  EE  +L+E+ + S   +PD  +++ +  ++G  G
Sbjct: 386 MRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTAMLNIYGSGG 445

Query: 118 DYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGK 11
           +      + +EM  +GVE N++    L++ +GK+G+
Sbjct: 446 NVKRSMELFEEMLELGVEINVMCCTCLIQCLGKSGR 481



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
 Frame = -2

Query: 403 EMIENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLG 224
           EM    ++ + + Y+T++    +      A   F+ M ++G+ P+E T +A++ +Y K  
Sbjct: 315 EMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKAR 374

Query: 223 KVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEM-KSVGVEPNLVVY 47
              + L L+E+ R++GW  D I ++ L  M  + G  +    + +EM KS    P+   Y
Sbjct: 375 WARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSY 434

Query: 46  NTLLEAMGKAG 14
             +L   G  G
Sbjct: 435 TAMLNIYGSGG 445


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score =  426 bits (1095), Expect = e-117
 Identities = 202/281 (71%), Positives = 246/281 (87%)
 Frame = -2

Query: 844 LSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLNDLR 665
           LS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSL R K+  Y+ NP++ DLR
Sbjct: 65  LSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR 123

Query: 664 MFSKKLNACDPSHENEFLAVLEDIPHPPTRENALLILNSLRPWQKTLCFFTWLKNQNVFP 485
            F++KLN+ + + ++EFL++L++IPHPP R+NALL+LNSLR WQKT  FF W+K++N+FP
Sbjct: 124 AFAQKLNSSNFTEKSEFLSLLDEIPHPPDRDNALLVLNSLREWQKTHTFFNWVKSKNLFP 183

Query: 484 VETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEW 305
           +ETIFYNV MKSLRFGRQF +IE++A EM+++ +ELDNITYSTIITCAKRCN +DKA+EW
Sbjct: 184 METIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEW 243

Query: 304 FERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGE 125
           FERMYKTGLMPDEVTYSA+LDVY+KL KVEEVLSLYE+  A+GWKPD IAFSVLGKMFGE
Sbjct: 244 FERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGE 303

Query: 124 AGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGL 2
           AGDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGL
Sbjct: 304 AGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGL 344



 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
 Frame = -2

Query: 481 ETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEWF 302
           + I ++V+ K       +  I  +  EM   +++ + + Y+T++    R      A   F
Sbjct: 290 DAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLF 349

Query: 301 ERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGEA 122
             M + GL P+E T +A++ +Y K    ++ L L+E+ +A  W  D I ++ L  M  + 
Sbjct: 350 NEMLEAGLTPNEKTLTALVKIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADI 409

Query: 121 GDYDGIRYVLQEMK-SVGVEPNLVVYNTLLEAMGKAGK 11
           G  +    +  +MK SV  +P+   Y  +L   G  GK
Sbjct: 410 GLEEEAERLFNDMKESVQCKPDNFSYTAMLNIYGSGGK 447



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 37/165 (22%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
 Frame = -2

Query: 508 LKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCN 329
           +K+ +V P   + YN +++++    +  +   L NEM+E  +  +  T + ++    +  
Sbjct: 317 MKSMDVKP-NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKAR 375

Query: 328 MFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRAS-GWKPDPIAF 152
               A++ +E M       D + Y+ +L++ A +G  EE   L+   + S   KPD  ++
Sbjct: 376 WAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCKPDNFSY 435

Query: 151 SVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKA 17
           + +  ++G  G  +    + +EM   GV+ N++    L++ +GKA
Sbjct: 436 TAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQCLGKA 480


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
           gi|8885599|dbj|BAA97529.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 711

 Score =  421 bits (1082), Expect = e-115
 Identities = 200/281 (71%), Positives = 245/281 (87%)
 Frame = -2

Query: 844 LSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLNDLR 665
           LS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSL R K+  Y+ NP++ DLR
Sbjct: 65  LSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR 123

Query: 664 MFSKKLNACDPSHENEFLAVLEDIPHPPTRENALLILNSLRPWQKTLCFFTWLKNQNVFP 485
            F+ KLN+   + ++EFL++L++IPHPP R+NALL+LNSLR WQKT  FF W+K++++FP
Sbjct: 124 AFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFP 183

Query: 484 VETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEW 305
           +ETIFYNV MKSLRFGRQF +IE++A EM+++ +ELDNITYSTIITCAKRCN+++KA+EW
Sbjct: 184 METIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEW 243

Query: 304 FERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGE 125
           FERMYKTGLMPDEVTYSA+LDVY+K GKVEEVLSLYE+  A+GWKPD IAFSVLGKMFGE
Sbjct: 244 FERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGE 303

Query: 124 AGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGL 2
           AGDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGL
Sbjct: 304 AGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGL 344



 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
 Frame = -2

Query: 481 ETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTIITCAKRCNMFDKAVEWF 302
           + I ++V+ K       +  I  +  EM   +++ + + Y+T++    R      A   F
Sbjct: 290 DAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLF 349

Query: 301 ERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKPDPIAFSVLGKMFGEA 122
             M + GL P+E T +A++ +Y K     + L L+E+ +A  W  D I ++ L  M  + 
Sbjct: 350 NEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADI 409

Query: 121 GDYDGIRYVLQEMK-SVGVEPNLVVYNTLLEAMGKAGK 11
           G  +    +  +MK SV   P+   Y  +L   G  GK
Sbjct: 410 GLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGK 447