BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027368
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]            63   4e-21
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]             64   6e-21
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    65   1e-20
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]    62   2e-20
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]    62   2e-20

>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score = 63.2 bits (152), Expect(2) = 4e-21
 Identities = 29/44 (65%), Positives = 33/44 (75%)
 Frame = -3

Query: 242  YLKGTSKTCLWFGGSKTLLEGYTDVDIAGDVDSMESTSGYLFTF 111
            YL+GTSK CL FG    +L GYTD D+AGDVDS +STSGYL  F
Sbjct: 1158 YLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINF 1201



 Score = 63.2 bits (152), Expect(2) = 4e-21
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = -2

Query: 105  GAVLWQSKLQKCVAISTTEVEYIAVTEYCKEMLWM 1
            GAV WQSKLQKCVA+STTE E+IA TE CKE++WM
Sbjct: 1204 GAVSWQSKLQKCVALSTTEAEFIAATEACKELIWM 1238


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score = 63.9 bits (154), Expect(2) = 6e-21
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = -3

Query: 242 YLKGTSKTCLWFGGSKTLLEGYTDVDIAGDVDSMESTSGYLFTFVR 105
           YL+GTS   L FGG + +LEG+TD D+AGD+D+ +STSGYLF F R
Sbjct: 517 YLRGTSNLSLCFGGGEPILEGFTDADMAGDLDNRKSTSGYLFKFAR 562



 Score = 61.6 bits (148), Expect(2) = 6e-21
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -2

Query: 108 KGAVLWQSKLQKCVAISTTEVEYIAVTEYCKEMLWM 1
           +GA+ WQSKLQKCVA+STTEVEYIA  E  KEMLW+
Sbjct: 562 RGAISWQSKLQKCVALSTTEVEYIAAVEASKEMLWL 597


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score = 65.1 bits (157), Expect(2) = 1e-20
 Identities = 27/44 (61%), Positives = 37/44 (84%)
 Frame = -3

Query: 242  YLKGTSKTCLWFGGSKTLLEGYTDVDIAGDVDSMESTSGYLFTF 111
            YL+GT+  CL FGGS  +L+GYTD D+AGD+D+ +S++GYLFTF
Sbjct: 1157 YLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTF 1200



 Score = 59.7 bits (143), Expect(2) = 1e-20
 Identities = 26/35 (74%), Positives = 30/35 (85%)
 Frame = -2

Query: 105  GAVLWQSKLQKCVAISTTEVEYIAVTEYCKEMLWM 1
            GA+ WQSKLQKCVA+STTE EYIA TE  KEM+W+
Sbjct: 1203 GAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1237


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score = 62.4 bits (150), Expect(2) = 2e-20
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -2

Query: 105  GAVLWQSKLQKCVAISTTEVEYIAVTEYCKEMLWM 1
            GAV WQS+LQKCVA+STTE EYIA  E CKE+LWM
Sbjct: 1174 GAVSWQSRLQKCVALSTTEAEYIAAVEACKELLWM 1208



 Score = 61.6 bits (148), Expect(2) = 2e-20
 Identities = 29/44 (65%), Positives = 34/44 (77%)
 Frame = -3

Query: 242  YLKGTSKTCLWFGGSKTLLEGYTDVDIAGDVDSMESTSGYLFTF 111
            YL+GTSK  L FG  K +L GYTD D+AGDVD+ +STSGYL TF
Sbjct: 1128 YLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTF 1171


>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
          Length = 1017

 Score = 62.4 bits (150), Expect(2) = 2e-20
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -2

Query: 105 GAVLWQSKLQKCVAISTTEVEYIAVTEYCKEMLWM 1
           GAV WQS+LQKCVA+STTE EYIA  E CKE+LWM
Sbjct: 833 GAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWM 867



 Score = 61.2 bits (147), Expect(2) = 2e-20
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = -3

Query: 242 YLKGTSKTCLWFGGSKTLLEGYTDVDIAGDVDSMESTSGYLFT 114
           YL+GTSK  L FGG K +L GYTD D+AGDVD+  STSGYL T
Sbjct: 787 YLRGTSKLKLTFGGGKPILVGYTDSDMAGDVDNRRSTSGYLMT 829