BLASTX nr result
ID: Coptis25_contig00027355
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00027355 (463 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homol... 68 5e-12 ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding prote... 65 6e-12 emb|CAN61300.1| hypothetical protein VITISV_011315 [Vitis vinifera] 65 6e-12 gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea ... 62 2e-11 ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea ma... 62 2e-11 >ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis sativus] gi|449502733|ref|XP_004161727.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis sativus] Length = 377 Score = 67.8 bits (164), Expect(2) = 5e-12 Identities = 33/44 (75%), Positives = 36/44 (81%) Frame = +3 Query: 54 TIITSYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185 T+ +R KKIFVGRL QEASADD+RQYFGRFGRI DVYVPK Sbjct: 224 TVPLEFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPK 267 Score = 27.7 bits (60), Expect(2) = 5e-12 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 1 ALGAPTLYGHPATACG 48 ALGAPTLY HP + G Sbjct: 204 ALGAPTLYDHPGSVYG 219 >ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform 1 [Vitis vinifera] gi|359480890|ref|XP_003632540.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform 2 [Vitis vinifera] gi|296082418|emb|CBI21423.3| unnamed protein product [Vitis vinifera] Length = 359 Score = 65.5 bits (158), Expect(2) = 6e-12 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 SYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185 S R KKIFVGRL QEASA+D+RQYFGRFGRI DVYVPK Sbjct: 218 STRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 257 Score = 29.6 bits (65), Expect(2) = 6e-12 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = +1 Query: 1 ALGAPTLYGHPATACGR 51 ALGAPTLY HP + GR Sbjct: 199 ALGAPTLYDHPGSVYGR 215 >emb|CAN61300.1| hypothetical protein VITISV_011315 [Vitis vinifera] Length = 335 Score = 65.5 bits (158), Expect(2) = 6e-12 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = +3 Query: 66 SYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185 S R KKIFVGRL QEASA+D+RQYFGRFGRI DVYVPK Sbjct: 211 STRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 250 Score = 29.6 bits (65), Expect(2) = 6e-12 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = +1 Query: 1 ALGAPTLYGHPATACGR 51 ALGAPTLY HP + GR Sbjct: 192 ALGAPTLYDHPGSVYGR 208 >gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays] gi|195644612|gb|ACG41774.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays] Length = 360 Score = 62.4 bits (150), Expect(2) = 2e-11 Identities = 27/34 (79%), Positives = 30/34 (88%) Frame = +3 Query: 84 KKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185 KKIFVGRL QEA+ DD+RQYFGRFGRI D Y+PK Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260 Score = 30.8 bits (68), Expect(2) = 2e-11 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 Query: 4 LGAPTLYGHPATACGRVLL*PVIGLGER 87 LGAPTLY HP +A GR P +G++ Sbjct: 201 LGAPTLYDHPGSAYGRGYYGPSQAVGKK 228 >ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea mays] gi|194692652|gb|ACF80410.1| unknown [Zea mays] gi|194701144|gb|ACF84656.1| unknown [Zea mays] gi|224032577|gb|ACN35364.1| unknown [Zea mays] gi|413951337|gb|AFW83986.1| heterogeneous nuclear ribonucleoprotein 27C isoform 1 [Zea mays] gi|413951338|gb|AFW83987.1| heterogeneous nuclear ribonucleoprotein 27C isoform 2 [Zea mays] gi|413951339|gb|AFW83988.1| heterogeneous nuclear ribonucleoprotein 27C isoform 3 [Zea mays] gi|413951340|gb|AFW83989.1| heterogeneous nuclear ribonucleoprotein 27C isoform 4 [Zea mays] gi|413951341|gb|AFW83990.1| heterogeneous nuclear ribonucleoprotein 27C isoform 5 [Zea mays] Length = 360 Score = 62.4 bits (150), Expect(2) = 2e-11 Identities = 27/34 (79%), Positives = 30/34 (88%) Frame = +3 Query: 84 KKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185 KKIFVGRL QEA+ DD+RQYFGRFGRI D Y+PK Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260 Score = 30.8 bits (68), Expect(2) = 2e-11 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 Query: 4 LGAPTLYGHPATACGRVLL*PVIGLGER 87 LGAPTLY HP +A GR P +G++ Sbjct: 201 LGAPTLYDHPGSAYGRGYYGPSQAVGKK 228