BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027355
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homol...    68   5e-12
ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding prote...    65   6e-12
emb|CAN61300.1| hypothetical protein VITISV_011315 [Vitis vinifera]    65   6e-12
gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea ...    62   2e-11
ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea ma...    62   2e-11

>ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
           sativus] gi|449502733|ref|XP_004161727.1| PREDICTED:
           RNA-binding protein Musashi homolog 1-like [Cucumis
           sativus]
          Length = 377

 Score = 67.8 bits (164), Expect(2) = 5e-12
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +3

Query: 54  TIITSYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185
           T+   +R   KKIFVGRL QEASADD+RQYFGRFGRI DVYVPK
Sbjct: 224 TVPLEFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPK 267



 Score = 27.7 bits (60), Expect(2) = 5e-12
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 1   ALGAPTLYGHPATACG 48
           ALGAPTLY HP +  G
Sbjct: 204 ALGAPTLYDHPGSVYG 219


>ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
           1 [Vitis vinifera] gi|359480890|ref|XP_003632540.1|
           PREDICTED: uncharacterized RNA-binding protein
           C660.15-like isoform 2 [Vitis vinifera]
           gi|296082418|emb|CBI21423.3| unnamed protein product
           [Vitis vinifera]
          Length = 359

 Score = 65.5 bits (158), Expect(2) = 6e-12
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  SYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185
           S R   KKIFVGRL QEASA+D+RQYFGRFGRI DVYVPK
Sbjct: 218 STRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 257



 Score = 29.6 bits (65), Expect(2) = 6e-12
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   ALGAPTLYGHPATACGR 51
           ALGAPTLY HP +  GR
Sbjct: 199 ALGAPTLYDHPGSVYGR 215


>emb|CAN61300.1| hypothetical protein VITISV_011315 [Vitis vinifera]
          Length = 335

 Score = 65.5 bits (158), Expect(2) = 6e-12
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +3

Query: 66  SYRIGRKKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185
           S R   KKIFVGRL QEASA+D+RQYFGRFGRI DVYVPK
Sbjct: 211 STRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 250



 Score = 29.6 bits (65), Expect(2) = 6e-12
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   ALGAPTLYGHPATACGR 51
           ALGAPTLY HP +  GR
Sbjct: 192 ALGAPTLYDHPGSVYGR 208


>gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
           gi|195644612|gb|ACG41774.1| heterogeneous nuclear
           ribonucleoprotein 27C [Zea mays]
          Length = 360

 Score = 62.4 bits (150), Expect(2) = 2e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 84  KKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185
           KKIFVGRL QEA+ DD+RQYFGRFGRI D Y+PK
Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260



 Score = 30.8 bits (68), Expect(2) = 2e-11
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   LGAPTLYGHPATACGRVLL*PVIGLGER 87
           LGAPTLY HP +A GR    P   +G++
Sbjct: 201 LGAPTLYDHPGSAYGRGYYGPSQAVGKK 228


>ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea mays]
           gi|194692652|gb|ACF80410.1| unknown [Zea mays]
           gi|194701144|gb|ACF84656.1| unknown [Zea mays]
           gi|224032577|gb|ACN35364.1| unknown [Zea mays]
           gi|413951337|gb|AFW83986.1| heterogeneous nuclear
           ribonucleoprotein 27C isoform 1 [Zea mays]
           gi|413951338|gb|AFW83987.1| heterogeneous nuclear
           ribonucleoprotein 27C isoform 2 [Zea mays]
           gi|413951339|gb|AFW83988.1| heterogeneous nuclear
           ribonucleoprotein 27C isoform 3 [Zea mays]
           gi|413951340|gb|AFW83989.1| heterogeneous nuclear
           ribonucleoprotein 27C isoform 4 [Zea mays]
           gi|413951341|gb|AFW83990.1| heterogeneous nuclear
           ribonucleoprotein 27C isoform 5 [Zea mays]
          Length = 360

 Score = 62.4 bits (150), Expect(2) = 2e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 84  KKIFVGRLSQEASADDIRQYFGRFGRIADVYVPK 185
           KKIFVGRL QEA+ DD+RQYFGRFGRI D Y+PK
Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260



 Score = 30.8 bits (68), Expect(2) = 2e-11
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   LGAPTLYGHPATACGRVLL*PVIGLGER 87
           LGAPTLY HP +A GR    P   +G++
Sbjct: 201 LGAPTLYDHPGSAYGRGYYGPSQAVGKK 228