BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027320
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522543.1| pentatricopeptide repeat-containing protein,...   188   3e-46
ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containi...   187   6e-46
dbj|BAK07249.1| predicted protein [Hordeum vulgare subsp. vulgare]    183   1e-44
ref|XP_002305756.1| predicted protein [Populus trichocarpa] gi|2...   181   4e-44
ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containi...   180   9e-44

>ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538234|gb|EEF39843.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 530

 Score =  188 bits (478), Expect = 3e-46
 Identities = 89/127 (70%), Positives = 105/127 (82%)
 Frame = -1

Query: 464 EIFKSMERDHSSKPRMEHYACMVDLLGRSGSLKEALDFIMGMPLKPNSDVWAALLGASRL 285
           EIF+SMER++S KP MEHYACMVDLLGR+GSL  A +F+MGMP KP+SDVWAALL A  L
Sbjct: 402 EIFESMEREYSLKPGMEHYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNL 461

Query: 284 HDNADMAGIAANEIFKLNSAERPGAYIALSNTFAATGKWDGVTGVRELMKERRVSKDTGC 105
           H N +MA +AANE+FKLN+  R GAY+ALSNT AA GKWDGVT VRE+MK R + KDTG 
Sbjct: 462 HGNVEMASVAANELFKLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGS 521

Query: 104 SWIGTDS 84
           SW+GT+S
Sbjct: 522 SWVGTES 528


>ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial [Vitis vinifera]
          Length = 533

 Score =  187 bits (476), Expect = 6e-46
 Identities = 89/127 (70%), Positives = 106/127 (83%)
 Frame = -1

Query: 461 IFKSMERDHSSKPRMEHYACMVDLLGRSGSLKEALDFIMGMPLKPNSDVWAALLGASRLH 282
           I +SMERD+  KPRMEHYACMVDLLGR+GSL++A +F+M MP KP SDVWAALL + +LH
Sbjct: 406 ILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALLSSCQLH 465

Query: 281 DNADMAGIAANEIFKLNSAERPGAYIALSNTFAATGKWDGVTGVRELMKERRVSKDTGCS 102
            + +MA +AA+EIFKLNS  RPGAY+ALSN  AA GKWD V+ VR+LMK R VSKDTGCS
Sbjct: 466 GDVEMASMAAHEIFKLNSDGRPGAYVALSNALAAAGKWDSVSEVRQLMKVRGVSKDTGCS 525

Query: 101 WIGTDSG 81
           W+GTDSG
Sbjct: 526 WVGTDSG 532


>dbj|BAK07249.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score =  183 bits (464), Expect = 1e-44
 Identities = 83/127 (65%), Positives = 105/127 (82%)
 Frame = -1

Query: 464 EIFKSMERDHSSKPRMEHYACMVDLLGRSGSLKEALDFIMGMPLKPNSDVWAALLGASRL 285
           E+F+SMERD S KPRMEHYACMVDLLGR GS+++A DF+ G+P +PNSDVWAALLGA+ L
Sbjct: 173 ELFQSMERDCSLKPRMEHYACMVDLLGRFGSVRQAYDFVRGIPARPNSDVWAALLGAATL 232

Query: 284 HDNADMAGIAANEIFKLNSAERPGAYIALSNTFAATGKWDGVTGVRELMKERRVSKDTGC 105
           H + D+A +A+ E+F+L+ A RPGAY+A SNT AA GKWDGV  VRE+MK+R V KD  C
Sbjct: 233 HGDVDIANVASREVFELSRAGRPGAYMAFSNTLAAAGKWDGVHQVREMMKQRGVLKDAAC 292

Query: 104 SWIGTDS 84
           SW+G+D+
Sbjct: 293 SWVGSDN 299


>ref|XP_002305756.1| predicted protein [Populus trichocarpa] gi|222848720|gb|EEE86267.1|
           predicted protein [Populus trichocarpa]
          Length = 530

 Score =  181 bits (460), Expect = 4e-44
 Identities = 81/126 (64%), Positives = 105/126 (83%)
 Frame = -1

Query: 464 EIFKSMERDHSSKPRMEHYACMVDLLGRSGSLKEALDFIMGMPLKPNSDVWAALLGASRL 285
           EIF SMERD+S+KPRMEHYACMVDLLGR+G+L++A + + GMP KPNSDVWAALL +  +
Sbjct: 402 EIFDSMERDYSTKPRMEHYACMVDLLGRAGNLQQAWELVKGMPEKPNSDVWAALLSSCNM 461

Query: 284 HDNADMAGIAANEIFKLNSAERPGAYIALSNTFAATGKWDGVTGVRELMKERRVSKDTGC 105
           H N +MA +AAN++FK+N+  RPGAY+ALSNT AA  +WD V+ +RE+MK R +SKDT C
Sbjct: 462 HGNVEMARVAANKLFKINAIGRPGAYVALSNTLAAAERWDSVSELREMMKLRGISKDTAC 521

Query: 104 SWIGTD 87
           SW+GT+
Sbjct: 522 SWVGTE 527


>ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Glycine max]
          Length = 525

 Score =  180 bits (457), Expect = 9e-44
 Identities = 84/127 (66%), Positives = 103/127 (81%)
 Frame = -1

Query: 464 EIFKSMERDHSSKPRMEHYACMVDLLGRSGSLKEALDFIMGMPLKPNSDVWAALLGASRL 285
           EIF+SME ++  KP MEHYACMVDLLGR+G L +A +F+M MP +PN DVWAALL + RL
Sbjct: 397 EIFQSMENEYLVKPGMEHYACMVDLLGRAGMLNQAWEFVMRMPERPNLDVWAALLSSCRL 456

Query: 284 HDNADMAGIAANEIFKLNSAERPGAYIALSNTFAATGKWDGVTGVRELMKERRVSKDTGC 105
           H N +MA +AANE+FKLN+  RPGAY+ALSNT AA GKW+ VT +RE+MKER +SKDTG 
Sbjct: 457 HGNLEMAKLAANELFKLNATGRPGAYVALSNTLAAAGKWESVTELREIMKERGISKDTGR 516

Query: 104 SWIGTDS 84
           SW+G DS
Sbjct: 517 SWVGADS 523