BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027310
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   103   2e-20
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   102   3e-20
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...    92   6e-17
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    86   3e-15
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15

>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  103 bits (257), Expect = 2e-20
 Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 9/172 (5%)
 Frame = -1

Query: 524 VDFYGAIWACCIDSLHPKATRVAPPIDNNFAGTRKYIVELFGELLQLRRRWESSLT---D 354
           V+ YG+I  C +    P+ + +  P    F G  +Y+VE   ELL + R  + +     D
Sbjct: 222 VNKYGSIAVCDVSGSSPRVSIIEMP--QQFGGDLQYLVESGEELLLVTRYLDLTYDVEXD 279

Query: 353 DNNRVYFTIKFEVFKLDQATLKWVETKSLCGGMLFVGDNTSMSLMASDFPGCKPNCIYFT 174
             + +Y T +F+V +LD    +W    SL    LF+G+N S+SL + DFPGCK NCIY+T
Sbjct: 280 QTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYT 339

Query: 173 EEGCTSYREYRHHGIGA------YNLEDGSIEPPYLIDPKSIIFPSPIWVEP 36
           ++    Y E  + GIG       +NLEDGSIE P       I +P P+WV P
Sbjct: 340 DD----YSEDNYDGIGGEQDLGIFNLEDGSIE-PLPCSHFRIRWPPPLWVTP 386


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  102 bits (255), Expect = 3e-20
 Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 9/172 (5%)
 Frame = -1

Query: 524 VDFYGAIWACCIDSLHPKATRVAPPIDNNFAGTRKYIVELFGELLQLRRRWESSLT---D 354
           V+ YG+I  C +    P+ + +  P    F G  +Y+VE   ELL + R  + +     D
Sbjct: 222 VNKYGSIAVCDVSGSSPRVSIIEMP--QQFGGDLQYLVESGEELLLVTRYLDLTYDVEPD 279

Query: 353 DNNRVYFTIKFEVFKLDQATLKWVETKSLCGGMLFVGDNTSMSLMASDFPGCKPNCIYFT 174
             + +Y T +F+V +LD    +W    SL    LF+G+N S+SL + DFPGCK NCIY+T
Sbjct: 280 QTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYT 339

Query: 173 EEGCTSYREYRHHGIGA------YNLEDGSIEPPYLIDPKSIIFPSPIWVEP 36
           ++    Y E  + GIG       +NLEDGSIE P       I +P P+WV P
Sbjct: 340 DD----YSEDNYDGIGGEQDLGIFNLEDGSIE-PLPCSHFRIRWPPPLWVTP 386


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
 Frame = -1

Query: 476 PKATRVAPPIDNNFAGTRKYIVELFGELLQLRRRWESSLTD----DNNRVYFTIKFEVFK 309
           P+ + +       FAG   Y V   G++L L R  +   +D    +++ VY T+ FEVFK
Sbjct: 235 PRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFK 294

Query: 308 LDQATLKWVETKSLCGGMLFVGDNTSMSLMASDFPGCKPNCIYFTEEGCTSYRE--YRHH 135
           ++   L W   ++L   +LFVG N+S+S  ASDF GC  +CIYFT++   S  +     H
Sbjct: 295 MNWGLLTWQRVETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTDDYSESNDDDACGKH 354

Query: 134 GIGAYNLEDGSIEPPYLIDPKS---IIFPSPIWVEP 36
            +G + L D SIEP    +  S   + +P PIWV P
Sbjct: 355 DLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSP 390


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 60/147 (40%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
 Frame = -1

Query: 437 FAGTRKYIVELFGELLQLRRRWESSLTDDNNRVYFTIK----FEVFKLDQATLKWVETKS 270
           F G +K +VE  GELL L   + +   DD+  V + I+    F+VF+LDQ   KWVE +S
Sbjct: 241 FGGDKKVLVESEGELL-LVDTYFTMYHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIES 299

Query: 269 LCGGMLFVGDNTSMSLMASDFPGCKPNCIYFTEEGCTSYRE----YRHHGIGAYNLEDGS 102
           L   +LF+GD++S S  ASDF GCK N I FT     S  E     R   IG ++L+ GS
Sbjct: 300 LGDRLLFLGDDSSFSARASDFYGCKGNSICFTNISFFSDAEEDDASRSGTIGVFDLDSGS 359

Query: 101 IEP-PYLIDPKSIIFPSPIWVEPTLHG 24
           I P     +    I+P P WV  T  G
Sbjct: 360 IGPLSSYANYSKTIWPPPAWVSSTSEG 386


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
 Frame = -1

Query: 512 GAIWACCIDSLHPKATRVAPPIDNNFAGTRKYIVELFGELLQLRRRWESSLTDDNNRVYF 333
           G I  C ++   PK + +  P      G  +Y+V     LL + R  +  +  D   +Y 
Sbjct: 230 GQIVVCDVNGNSPKVSFIETP--RQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIF-IYK 286

Query: 332 TIKFEVFKLDQATLKWVETKSLCGGMLFVGDNTSMSLMASDFPGCKPNCIYFTEE-GCTS 156
           T +FEVFKLD    +W    SL   MLF+G+N+S++L AS   GC  +CIY+T++    +
Sbjct: 287 TARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANN 346

Query: 155 YREY-RHHGIGAYNLEDGSIEPPYLIDPKS---IIFPSPIWVEP 36
           Y  +   H +G + L DGSIEP       S   + +P P+W+ P
Sbjct: 347 YDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISP 390