BLASTX nr result
ID: Coptis25_contig00027279
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00027279
(1646 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30945.3| unnamed protein product [Vitis vinifera] 515 e-143
ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi... 515 e-143
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera] 514 e-143
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,... 480 e-133
gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thali... 478 e-132
>emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 515 bits (1326), Expect = e-143
Identities = 250/350 (71%), Positives = 296/350 (84%), Gaps = 1/350 (0%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
DVVTYT+V+NG C+ KVD+AKK+L M K GCKPNTVSYTALLNGLC+ G
Sbjct: 442 DVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMM 501
Query: 1464 XXXXE-WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHE 1288
E WW+PNAITYSV+MHGFRREGK +EAC++VREM KKGF PTPVEINLL+QS C E
Sbjct: 502 NMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQE 561
Query: 1287 GKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTY 1108
K +AK F+E+C++NGCAVN VNFTTVIHGFC++ +LEAALSLLDDMYLSN++PDVVTY
Sbjct: 562 EKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTY 621
Query: 1107 TTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLA 928
TT+ID LGKKGR+EEATKL M+ML G+ PTPVT+RTVIH+YC G+V DLLKLLEKML+
Sbjct: 622 TTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLS 681
Query: 927 RKEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSY 748
R+E TAYNQVIEKLC FGNLE+AY LLGKVLRTAS+ DANTCH+L+ESYL+K PL+SY
Sbjct: 682 RQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSY 741
Query: 747 NIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLLSPQ 598
N+ACRMF+RNLIPDL LC+KVS +L+L GK +EA+KL+ RFVERG +SPQ
Sbjct: 742 NVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISPQ 791
Score = 148 bits (373), Expect = 5e-33
Identities = 89/350 (25%), Positives = 170/350 (48%), Gaps = 4/350 (1%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
+V+TY ++ GYC + +++ A +L+ M GC P+ +SY ++ LC+
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360
Query: 1464 XXXXEW--WVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCH 1291
+ +P+ +TY+ +H + G EA E +RE ++ F V + ++ SFC
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420
Query: 1290 EGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVT 1111
EG+ AK + E S GC + V +T+VI+G C+E ++ A +L MY P+ V+
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 480
Query: 1110 YTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKML 931
YT +++GL K G EA +++ P +T+ ++H + +GK + L+ +M+
Sbjct: 481 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 540
Query: 930 ARKEFTT--AYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPL 757
+ F T N +I+ LC+ ++EA + + L + ++ + K++
Sbjct: 541 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 600
Query: 756 LSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLL 607
+ ++ M+ N PD+ + L G+ +EA KL + + GL+
Sbjct: 601 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLI 650
Score = 86.3 bits (212), Expect = 2e-14
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Frame = -3
Query: 1329 PVEINLLLQSFCHEGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLD 1150
P ++ S+ GK R+A L G + T IH L+ A+ L+
Sbjct: 232 PEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLE 291
Query: 1149 DMYLSNRYPDVVTYTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKG 970
M + P+V+TY +I G RLE+A +L+ EM KG P +++ TV+ C++
Sbjct: 292 RMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEK 351
Query: 969 KVGDLLKLLEKMLARKEF---TTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTC 799
++ ++ L+EKML YN + L + G+ +EA L + R D
Sbjct: 352 RIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGY 411
Query: 798 HLLMESYLNKENPLLSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVE 619
++ S+ + + I MF + IPD+ V L K +A+K+L++ +
Sbjct: 412 SAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYK 471
Query: 618 RG 613
G
Sbjct: 472 HG 473
Score = 78.2 bits (191), Expect = 6e-12
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Frame = -3
Query: 1440 PNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNF 1261
P A Y VM + R GKL A ++ M K G P N + + A F
Sbjct: 232 PEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 289
Query: 1260 LEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGK 1081
LE N + + +I G+C LE A+ L+ +M PD ++Y TV+ L K
Sbjct: 290 LERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCK 349
Query: 1080 KGRLEEATKLLMEMLHKGMD--PTPVTFRTVIHRYCEKGKVGDLLKLLEKMLAR--KEFT 913
+ R++E +LLME + K + P VT+ T +H + G + L+ L + R +
Sbjct: 350 EKRIKE-VRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 408
Query: 912 TAYNQVIEKLCRFGNLEEAYNLLGKV 835
Y+ ++ CR G +++A ++ ++
Sbjct: 409 VGYSAIVHSFCREGRMDKAKEIVNEM 434
>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Vitis vinifera]
Length = 733
Score = 515 bits (1326), Expect = e-143
Identities = 250/350 (71%), Positives = 296/350 (84%), Gaps = 1/350 (0%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
DVVTYT+V+NG C+ KVD+AKK+L M K GCKPNTVSYTALLNGLC+ G
Sbjct: 379 DVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMM 438
Query: 1464 XXXXE-WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHE 1288
E WW+PNAITYSV+MHGFRREGK +EAC++VREM KKGF PTPVEINLL+QS C E
Sbjct: 439 NMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQE 498
Query: 1287 GKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTY 1108
K +AK F+E+C++NGCAVN VNFTTVIHGFC++ +LEAALSLLDDMYLSN++PDVVTY
Sbjct: 499 EKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTY 558
Query: 1107 TTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLA 928
TT+ID LGKKGR+EEATKL M+ML G+ PTPVT+RTVIH+YC G+V DLLKLLEKML+
Sbjct: 559 TTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLS 618
Query: 927 RKEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSY 748
R+E TAYNQVIEKLC FGNLE+AY LLGKVLRTAS+ DANTCH+L+ESYL+K PL+SY
Sbjct: 619 RQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSY 678
Query: 747 NIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLLSPQ 598
N+ACRMF+RNLIPDL LC+KVS +L+L GK +EA+KL+ RFVERG +SPQ
Sbjct: 679 NVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISPQ 728
Score = 148 bits (373), Expect = 5e-33
Identities = 89/350 (25%), Positives = 170/350 (48%), Gaps = 4/350 (1%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
+V+TY ++ GYC + +++ A +L+ M GC P+ +SY ++ LC+
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 297
Query: 1464 XXXXEW--WVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCH 1291
+ +P+ +TY+ +H + G EA E +RE ++ F V + ++ SFC
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 1290 EGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVT 1111
EG+ AK + E S GC + V +T+VI+G C+E ++ A +L MY P+ V+
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417
Query: 1110 YTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKML 931
YT +++GL K G EA +++ P +T+ ++H + +GK + L+ +M+
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477
Query: 930 ARKEFTT--AYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPL 757
+ F T N +I+ LC+ ++EA + + L + ++ + K++
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 537
Query: 756 LSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLL 607
+ ++ M+ N PD+ + L G+ +EA KL + + GL+
Sbjct: 538 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLI 587
Score = 91.7 bits (226), Expect = 5e-16
Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 3/258 (1%)
Frame = -3
Query: 1377 ACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNFLEECMSNGCAVNAVNFTTVIH 1198
A ++R MAK+ P ++ S+ GK R+A L G + T IH
Sbjct: 153 AKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIH 212
Query: 1197 GFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGKKGRLEEATKLLMEMLHKGMDP 1018
L+ A+ L+ M + P+V+TY +I G RLE+A +L+ EM KG P
Sbjct: 213 VLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSP 272
Query: 1017 TPVTFRTVIHRYCEKGKVGDLLKLLEKMLARKEF---TTAYNQVIEKLCRFGNLEEAYNL 847
+++ TV+ C++ ++ ++ L+EKML YN + L + G+ +EA
Sbjct: 273 DKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEF 332
Query: 846 LGKVLRTASRNDANTCHLLMESYLNKENPLLSYNIACRMFDRNLIPDLDLCKKVSLRLIL 667
L + R D ++ S+ + + I MF + IPD+ V L
Sbjct: 333 LREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 392
Query: 666 TGKRKEAEKLLKRFVERG 613
K +A+K+L++ + G
Sbjct: 393 ERKVDQAKKMLRQMYKHG 410
Score = 78.2 bits (191), Expect = 6e-12
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Frame = -3
Query: 1440 PNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNF 1261
P A Y VM + R GKL A ++ M K G P N + + A F
Sbjct: 169 PEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 226
Query: 1260 LEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGK 1081
LE N + + +I G+C LE A+ L+ +M PD ++Y TV+ L K
Sbjct: 227 LERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCK 286
Query: 1080 KGRLEEATKLLMEMLHKGMD--PTPVTFRTVIHRYCEKGKVGDLLKLLEKMLAR--KEFT 913
+ R++E +LLME + K + P VT+ T +H + G + L+ L + R +
Sbjct: 287 EKRIKE-VRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 345
Query: 912 TAYNQVIEKLCRFGNLEEAYNLLGKV 835
Y+ ++ CR G +++A ++ ++
Sbjct: 346 VGYSAIVHSFCREGRMDKAKEIVNEM 371
>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 514 bits (1323), Expect = e-143
Identities = 250/350 (71%), Positives = 295/350 (84%), Gaps = 1/350 (0%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
DVVTYT+V+NG C+ KVD+AKK+L M K GCKPNTVSYTALLNGLC+ G
Sbjct: 379 DVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMM 438
Query: 1464 XXXXE-WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHE 1288
E WW+PNAITYSV+MHGFRREGK +EAC++VREM KKGF PTPVEINLL+QS C E
Sbjct: 439 NMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQE 498
Query: 1287 GKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTY 1108
K +AK F+E+C++NGCAVN VNFTTVIHGFC++ +LEAALSLLDDMYLSN++PDVVTY
Sbjct: 499 EKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTY 558
Query: 1107 TTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLA 928
TT+ID LGKKGR+EEATKL M+ML G PTPVT+RTVIH+YC G+V DLLKLLEKML+
Sbjct: 559 TTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLS 618
Query: 927 RKEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSY 748
R+E TAYNQVIEKLC FGNLE+AY LLGKVLRTAS+ DANTCH+L+ESYL+K PL+SY
Sbjct: 619 RQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSY 678
Query: 747 NIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLLSPQ 598
N+ACRMF+RNLIPDL LC+KVS +L+L GK +EA+KL+ RFVERG +SPQ
Sbjct: 679 NVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISPQ 728
Score = 145 bits (367), Expect = 2e-32
Identities = 88/348 (25%), Positives = 168/348 (48%), Gaps = 4/348 (1%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
+V+TY ++ GYC + +++ A +L+ M GC P+ +SY ++ LC+
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLM 297
Query: 1464 XXXXEW--WVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCH 1291
+ +P+ +TY+ +H + G EA E +RE ++ F V + ++ SFC
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 1290 EGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVT 1111
EG+ AK + E S GC + V +T+VI+G C+E ++ A +L MY P+ V+
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417
Query: 1110 YTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKML 931
YT +++GL K G EA +++ P +T+ ++H + +GK + L+ +M+
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477
Query: 930 ARKEFTT--AYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPL 757
+ F T N +I+ LC+ ++EA + + L + ++ + K++
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 537
Query: 756 LSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERG 613
+ ++ M+ N PD+ + L G+ +EA KL + + G
Sbjct: 538 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVG 585
Score = 93.2 bits (230), Expect = 2e-16
Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 3/258 (1%)
Frame = -3
Query: 1377 ACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNFLEECMSNGCAVNAVNFTTVIH 1198
A ++R MAK+ P ++ S+ GK R+A L G + T IH
Sbjct: 153 AKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIH 212
Query: 1197 GFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGKKGRLEEATKLLMEMLHKGMDP 1018
L+ A+ L+ M + P+V+TY +I G RLE+A +L+ EM KG P
Sbjct: 213 VLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSP 272
Query: 1017 TPVTFRTVIHRYCEKGKVGDLLKLLEKMLARKEF---TTAYNQVIEKLCRFGNLEEAYNL 847
+++ TV+ C++ ++ +L L+EKML YN + L + G+ +EA
Sbjct: 273 DKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEF 332
Query: 846 LGKVLRTASRNDANTCHLLMESYLNKENPLLSYNIACRMFDRNLIPDLDLCKKVSLRLIL 667
L + R D ++ S+ + + I MF + IPD+ V L
Sbjct: 333 LREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 392
Query: 666 TGKRKEAEKLLKRFVERG 613
K +A+K+L++ + G
Sbjct: 393 ERKVDQAKKMLRQMYKHG 410
Score = 75.9 bits (185), Expect = 3e-11
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 4/206 (1%)
Frame = -3
Query: 1440 PNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNF 1261
P A Y VM + R GKL A + M K G P N + + A F
Sbjct: 169 PEAFGY--VMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 226
Query: 1260 LEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGK 1081
LE N + + +I G+C LE A L+ +M PD ++Y TV+ L K
Sbjct: 227 LERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCK 286
Query: 1080 KGRLEEATKLLMEMLHKGMD--PTPVTFRTVIHRYCEKGKVGDLLKLLEKMLAR--KEFT 913
+ R++E +LLME + K + P VT+ T +H + G + L+ L + R +
Sbjct: 287 EKRIKE-LRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 345
Query: 912 TAYNQVIEKLCRFGNLEEAYNLLGKV 835
Y+ ++ CR G +++A ++ ++
Sbjct: 346 VGYSAIVHSFCREGRMDKAKEIVNEM 371
>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 737
Score = 480 bits (1235), Expect = e-133
Identities = 232/349 (66%), Positives = 283/349 (81%), Gaps = 1/349 (0%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
DVVTYTAVVNG C++GKV++AKK+L+ M K GCKPNTVSYTALLNGLC+ G
Sbjct: 381 DVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMM 440
Query: 1464 XXXXE-WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHE 1288
E WW PNAITYSVVMHG RREGKL+EAC++VREM KGF PTPVEINLL++S C E
Sbjct: 441 NTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLE 500
Query: 1287 GKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTY 1108
K +AK F+EEC++ GCAVNAVNFTTVIHGFC+ N++ ALSLLDDMYL+N++PD VT+
Sbjct: 501 QKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTF 560
Query: 1107 TTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLA 928
T +ID LGKKGR+EEAT M+ML KG+DPTPVT+R VIH+YC+ G+V +L+KLL KML+
Sbjct: 561 TAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLS 620
Query: 927 RKEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSY 748
R + TAYNQVIEKLC FGN E A ++G VLRTASR DANTCH+LMESYL+K PL +Y
Sbjct: 621 RSKCRTAYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAY 680
Query: 747 NIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLLSP 601
+ACRMFDRNLIPDL LC+K+S +L+L GK +EA+ L+ +FV+RG +SP
Sbjct: 681 KVACRMFDRNLIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRGNISP 729
Score = 148 bits (374), Expect = 4e-33
Identities = 90/349 (25%), Positives = 168/349 (48%), Gaps = 4/349 (1%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
+VVTY ++ GYC + +V+ A +L+ M GC P+ VSY ++ LC+
Sbjct: 240 NVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLM 299
Query: 1464 XXXXE--WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCH 1291
+ P+ +TY+ ++H + G EA E +RE ++GF V + ++ SFC
Sbjct: 300 EKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCM 359
Query: 1290 EGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVT 1111
+G+ AK + E ++ GC+ + V +T V++G C+ G +E A +L MY P+ V+
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVS 419
Query: 1110 YTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKML 931
YT +++GL + G EA +++ P +T+ V+H +GK+ + ++ +ML
Sbjct: 420 YTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREML 479
Query: 930 ARKEFTT--AYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPL 757
+ F T N +I+ LC + EA + + L +A ++ + +N
Sbjct: 480 TKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNID 539
Query: 756 LSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGL 610
+ ++ M+ N PD + L G+ +EA + +++GL
Sbjct: 540 TALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGL 588
Score = 116 bits (291), Expect = 2e-23
Identities = 80/344 (23%), Positives = 155/344 (45%), Gaps = 4/344 (1%)
Frame = -3
Query: 1632 YTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXXXXXX 1453
+ V+ Y R GK+ A ++L M K G +PN + ++ L
Sbjct: 174 FAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQ 233
Query: 1452 EWWV-PNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKAR 1276
+ PN +TY+ ++ G+ ++ A E++ EM KG P V ++ C + + +
Sbjct: 234 LVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIK 293
Query: 1275 DAKNFLEECM-SNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTV 1099
+ +N +E+ + N + V + T++H + G+ + AL L + D V Y+ +
Sbjct: 294 EVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAI 353
Query: 1098 IDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLAR-- 925
++ +GR++ A +++ EM+ KG P VT+ V++ C+ GKV + K+L++M
Sbjct: 354 VNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGC 413
Query: 924 KEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSYN 745
K T +Y ++ LC+ GN EA ++ +A T ++M + + +
Sbjct: 414 KPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACD 473
Query: 744 IACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERG 613
+ M + P + L L K EA+K ++ + RG
Sbjct: 474 VVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRG 517
Score = 94.4 bits (233), Expect = 8e-17
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 3/276 (1%)
Frame = -3
Query: 1431 ITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKARDAKNFLEE 1252
I Y +++ + A ++R M ++G P ++ S+ GK R+A L
Sbjct: 137 IVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTM 196
Query: 1251 CMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTVIDGLGKKGR 1072
G N + T IH LE AL L+ M L P+VVTY +I G +
Sbjct: 197 MQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQ 256
Query: 1071 LEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLARKEF---TTAYN 901
+E A +L+ EM KG P V++ TV+ C+ ++ ++ L+EKM+ + YN
Sbjct: 257 VEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYN 316
Query: 900 QVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSYNIACRMFDR 721
++ L + G+ +EA L + + D ++ S+ + + I M +
Sbjct: 317 TLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITK 376
Query: 720 NLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERG 613
PD+ V L GK +EA+K+L++ + G
Sbjct: 377 GCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHG 412
>gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 478 bits (1230), Expect = e-132
Identities = 231/350 (66%), Positives = 282/350 (80%), Gaps = 1/350 (0%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXX 1465
DVVTYTAVVNG+CR+G+VDKAKKLL+ M G KPNTVSYTALLNG+CRTG
Sbjct: 449 DVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMM 508
Query: 1464 XXXXE-WWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHE 1288
E WW PN+ITYSV+MHG RREGKL+EAC++VREM KGF P PVEINLLLQS C +
Sbjct: 509 NMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRD 568
Query: 1287 GKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTY 1108
G+ +A+ F+EEC++ GCA+N VNFTTVIHGFC+ L+AALS+LDDMYL N++ DV TY
Sbjct: 569 GRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTY 628
Query: 1107 TTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKMLA 928
TT++D LGKKGR+ EAT+L+ +MLHKG+DPTPVT+RTVIHRYC+ GKV DL+ +LEKM++
Sbjct: 629 TTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMIS 688
Query: 927 RKEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSY 748
R++ T YNQVIEKLC G LEEA LLGKVLRTASR+DA TC+ LME YL K PL +Y
Sbjct: 689 RQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAY 748
Query: 747 NIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGLLSPQ 598
+ACRMF+RNLIPD+ +C+K+S RL+L GK EA+KL+ R VERG +SPQ
Sbjct: 749 KVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQ 798
Score = 137 bits (345), Expect = 8e-30
Identities = 83/349 (23%), Positives = 167/349 (47%), Gaps = 4/349 (1%)
Frame = -3
Query: 1644 DVVTYTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTG--XXXXXXX 1471
+VVTY ++ GYC + +V++A +LLE M GC P+ VSY ++ LC+
Sbjct: 311 NVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLM 370
Query: 1470 XXXXXXEWWVPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCH 1291
VP+ +TY+ ++H + EA +++ +KGF + + ++ + C
Sbjct: 371 KKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCK 430
Query: 1290 EGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVT 1111
EG+ +AK+ + E C + V +T V++GFCR G ++ A LL M+ P+ V+
Sbjct: 431 EGRMSEAKDLINEM---DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVS 487
Query: 1110 YTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKML 931
YT +++G+ + G+ EA +++ P +T+ ++H +GK+ + ++ +M+
Sbjct: 488 YTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMV 547
Query: 930 ARKEF--TTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPL 757
+ F N +++ LCR G EA + + L + ++ + +
Sbjct: 548 LKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELD 607
Query: 756 LSYNIACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERGL 610
+ ++ M+ N D+ + L G+ EA +L+K+ + +G+
Sbjct: 608 AALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGI 656
Score = 99.8 bits (247), Expect = 2e-18
Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 4/344 (1%)
Frame = -3
Query: 1632 YTAVVNGYCRIGKVDKAKKLLESMSKLGCKPNTVSYTALLNGLCRTGXXXXXXXXXXXXX 1453
++ V+ Y R G++ A K+L M + G +PN + ++ R
Sbjct: 245 FSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQ 304
Query: 1452 EWW-VPNAITYSVVMHGFRREGKLAEACEMVREMAKKGFVPTPVEINLLLQSFCHEGKAR 1276
VPN +TY+ ++ G+ ++ EA E++ +M KG +P V ++ C E +
Sbjct: 305 VVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364
Query: 1275 DAKNFLEE-CMSNGCAVNAVNFTTVIHGFCREGNLEAALSLLDDMYLSNRYPDVVTYTTV 1099
+ ++ +++ +G + V + T+IH + + + AL L D D + Y+ +
Sbjct: 365 EVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAI 424
Query: 1098 IDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRTVIHRYCEKGKVGDLLKLLEKM--LAR 925
+ L K+GR+ EA L+ EM P VT+ V++ +C G+V KLL+ M
Sbjct: 425 VHALCKEGRMSEAKDLINEM---DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH 481
Query: 924 KEFTTAYNQVIEKLCRFGNLEEAYNLLGKVLRTASRNDANTCHLLMESYLNKENPLLSYN 745
K T +Y ++ +CR G EA ++ ++ T ++M + + +
Sbjct: 482 KPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACD 541
Query: 744 IACRMFDRNLIPDLDLCKKVSLRLILTGKRKEAEKLLKRFVERG 613
+ M + P + L G+ EA K ++ + +G
Sbjct: 542 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKG 585
Score = 77.8 bits (190), Expect = 8e-12
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Frame = -3
Query: 1356 MAKKGFVPTPVEINLLLQSFCHEGKARDAKNFLEECMSNGCAVNAVNFTTVIHGFCREGN 1177
M ++G TP + ++ S+ G+ RDA L G N + T I F R
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANR 292
Query: 1176 LEAALSLLDDMYLSNRYPDVVTYTTVIDGLGKKGRLEEATKLLMEMLHKGMDPTPVTFRT 997
LE AL L+ M + P+VVTY +I G R+EEA +LL +M KG P V++ T
Sbjct: 293 LEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYT 352
Query: 996 VIHRYCEKGKVGDLLKLLEKMLARKEFT---TAYNQVIEKLCRFGNLEEA 856
++ C++ ++ ++ L++KM YN +I L + + +EA
Sbjct: 353 IMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEA 402