BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027189
         (654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]      80   3e-13
dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]             75   1e-11
ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|2...    72   9e-11
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...    66   5e-09
ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus comm...    65   1e-08

>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
 Frame = +2

Query: 254  NEDDENEMLGLNERLAAYHIDSSPE--PXXXXXXXXXXXXXXXVEKSDKDTEFVAD--PX 421
            ++DD++E+L L ERLAAY++DSSPE                  V + D D +F  +    
Sbjct: 1260 SDDDDDEVLELKERLAAYNLDSSPENSAGNDKVVQKKEANKKVVMQMDSDDDFEEEIAAA 1319

Query: 422  XXXXXXXXXXXXXXXXXXXXXXXRKRGPAA--KKPLLS--QKLITDVLKPAEVG--SPDK 583
                                   +KRG AA  K+P  S  QKL+TD+LKPAE    SP+ 
Sbjct: 1320 PKGGRKKAAGKPKVAASKPPAAAKKRGTAANKKQPQTSSGQKLLTDMLKPAESSRASPEP 1379

Query: 584  KVRKLRPSPFNKKSSSVLGRIG 649
            KVRK+R SPFNKKS SV+GR+G
Sbjct: 1380 KVRKMRASPFNKKSGSVMGRVG 1401


>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 64/217 (29%), Positives = 93/217 (42%), Gaps = 13/217 (5%)
 Frame = +2

Query: 32   IVENNKGGKKASKKPTQXXXXXXXXXXXTSVAEIGENPVSSTTETGNVVEXXXXXXXXXX 211
            I +N +  KK +KK +                EI EN   +TTET   ++          
Sbjct: 1200 IQKNPRKNKKTTKKESAVEM------------EISEN---TTTETDVKIKKPRGKAAAKK 1244

Query: 212  XXXXXXXXXVVLVDNEDDENEMLGLNERLAAYHIDSSPEPXXXXXXXXXXXXXXXVEKS- 388
                        V+ ++D++ +  L +R+AAY+ DSSP+                 + + 
Sbjct: 1245 KEPAAKVVTAAPVEEQEDDDGIADLRQRIAAYNFDSSPDHSEDMATEVAPVQTKNKQPAR 1304

Query: 389  ----DKDTEFVA------DPXXXXXXXXXXXXXXXXXXXXXXXXRKRGPAAKKP--LLSQ 532
                 K T   A      D                         +KRGP+AK+   L+ Q
Sbjct: 1305 RGAAQKKTLSAASETDEDDDAFEPEEKKKKGGRKPAAAKAPAAAKKRGPSAKQSSQLVGQ 1364

Query: 533  KLITDVLKPAEVGSPDKKVRKLRPSPFNKKSSSVLGR 643
            KLIT+VLKPA   SP+KKVR++R SPFNKKSSS+LG+
Sbjct: 1365 KLITEVLKPAADDSPEKKVRRMRESPFNKKSSSILGK 1401


>ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1|
            predicted protein [Populus trichocarpa]
          Length = 1482

 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
 Frame = +2

Query: 245  LVDNEDDENEMLGLNERLAAYHIDSSPE----------------------PXXXXXXXXX 358
            ++D+ D+++E+  L +RL AY +DSSPE                      P         
Sbjct: 1259 VLDDFDEDDEIESLKDRLNAYRLDSSPEQSADMETDVLQVPARRGAARKKPLANVSVISD 1318

Query: 359  XXXXXXVEKSDKDTEFVADPXXXXXXXXXXXXXXXXXXXXXXXXRKRGPAAKKPL-LSQK 535
                  ++  D D E  A P                        ++RGPA+++   L QK
Sbjct: 1319 SEDEPNLD-DDADVEVKALPETKKKGGRKAAAANDKAAKPPAATKRRGPASQQSQGLGQK 1377

Query: 536  LITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRI 646
            L+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGRI
Sbjct: 1378 LLTEMLKPAEGAGISPEKKVRKVRASPFNKKSGSVLGRI 1416


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
            predicted protein [Populus trichocarpa]
          Length = 1468

 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 55/157 (35%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
 Frame = +2

Query: 248  VDNEDDENEMLGLNERLAAYHIDSSPE------------PXXXXXXXXXXXXXXXV---- 379
            + +EDDE E   L +RL AY +DSSPE            P               V    
Sbjct: 1252 ISDEDDEIE--SLKDRLKAYRLDSSPEQSADMETDVLRVPAGRNAARKKPLAAVSVISDS 1309

Query: 380  -EKSDKDTEF----VADPXXXXXXXXXXXXXXXXXXXXXXXXRKRGPAAKKPL-LSQKLI 541
             ++ D D +F     A P                        ++RGPA+K+   L Q+L+
Sbjct: 1310 EDEPDLDDDFDVQVKAVPETKKKGGRKAAAANDKAAKPPAATKRRGPASKQSQGLGQQLL 1369

Query: 542  TDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRI 646
            T++LKPAE    SP+KKVRK+R SPFNKKS S+LG I
Sbjct: 1370 TEMLKPAEESGISPEKKVRKMRASPFNKKSGSLLGGI 1406


>ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
            gi|223543074|gb|EEF44609.1| DNA topoisomerase II,
            putative [Ricinus communis]
          Length = 1212

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 3/55 (5%)
 Frame = +2

Query: 491  RKRGPAAKKPL-LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRI 646
            +KRGP  K+   L QKL+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGR+
Sbjct: 1079 KKRGPTKKESQGLGQKLLTEMLKPAENPGISPEKKVRKMRASPFNKKSGSVLGRV 1133