BLASTX nr result
ID: Coptis25_contig00027134
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00027134 (1005 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2... 348 9e-94 ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ... 338 2e-90 ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi... 330 4e-88 ref|XP_002533822.1| pentatricopeptide repeat-containing protein,... 329 6e-88 ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi... 325 1e-86 >ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1| predicted protein [Populus trichocarpa] Length = 506 Score = 348 bits (894), Expect = 9e-94 Identities = 167/324 (51%), Positives = 241/324 (74%) Frame = -1 Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823 SLN L+SVLC+ +G+ LV ++LLKS+ MNIR+EESTF++LITALC+++K+G+A+E+L+ Sbjct: 150 SLNTLISVLCRNSKGLKLVPEILLKSQVMNIRVEESTFQVLITALCRVRKVGFAIEMLNC 209 Query: 822 MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643 M G+ ++ +YS +LS +C+ +D + EV GFLE++R F P VDY+NV+ FLVK Sbjct: 210 MVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKG 269 Query: 642 GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463 +G+DAL ++ MK DRIKPD+ YT VL GVI D+ KA+E+FDE+LV G+VPD +TY Sbjct: 270 KRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKADELFDELLVFGLVPDAYTY 329 Query: 462 NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283 NVY+ GLC QN+ +AG K+VA MEELGCKP++ TYN L+ LCKVG++ +A E++ +M L Sbjct: 330 NVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGELVREMGL 389 Query: 282 KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103 KG+ N+ +Y I+I+GL G++ EAC +E+ L +G SL DE+ICGLC L+ + Sbjct: 390 KGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQSLMFDEIICGLCHRDLSCK 449 Query: 102 ALRILKQMVEMNIMPGVSAWEALL 31 AL++L++MV N+ PG AW+ALL Sbjct: 450 ALKLLEKMVGKNVSPGARAWKALL 473 >ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498545|gb|AES79748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 653 Score = 338 bits (866), Expect = 2e-90 Identities = 166/327 (50%), Positives = 238/327 (72%), Gaps = 3/327 (0%) Frame = -1 Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823 SLN LLS+LC ++E + +V +LLKSR M IRLEES+F +LI ALC++K++ YA+++++ Sbjct: 149 SLNLLLSLLCGKRECLRMVPDILLKSRDMKIRLEESSFWVLIKALCRIKRVDYAIKMMNC 208 Query: 822 MSEYGYDPDSTLYSRILSAMCKLQDVSSVE---VWGFLEEMRAKRFTPNEVDYANVVSFL 652 M E GY D + S I+S++C+ D++SVE VWG MR F P +D N++ FL Sbjct: 209 MVEDGYCLDDKICSLIISSLCEQNDLTSVEALVVWG---NMRKLGFCPGVMDCTNMIRFL 265 Query: 651 VKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDV 472 VK GKGMDAL+++ Q+K D IKPD+V YT VL G++ GD+ K +E+FDE+LVLG+VPDV Sbjct: 266 VKEGKGMDALEILNQLKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDV 325 Query: 471 HTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTK 292 +TYNVY+ GLC QN+F+ K+V ME+LGCKP+V TYNTL+GALC G + +AK V+ + Sbjct: 326 YTYNVYINGLCKQNNFDEALKIVVSMEKLGCKPNVVTYNTLLGALCMSGDLGKAKRVMKE 385 Query: 291 MRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGL 112 MRLKG++ NLH+Y I+++GL+ +GE+GEAC E+ML + F P S T D ++ +C+ GL Sbjct: 386 MRLKGVELNLHTYRIMLDGLVGKGEIGEACVLLEEMLEKCFYPRSSTFDSIVHQMCQKGL 445 Query: 111 NSEALRILKQMVEMNIMPGVSAWEALL 31 S+AL ++ ++V + PG WEALL Sbjct: 446 ISDALVLMNKIVAKSFDPGAKVWEALL 472 >ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Vitis vinifera] Length = 505 Score = 330 bits (845), Expect = 4e-88 Identities = 167/324 (51%), Positives = 227/324 (70%) Frame = -1 Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823 SLNALL VLCKR+EG+ +V Q+LLKS+ MNIRLEES+F IL+ ALC++KK YA+ IL+ Sbjct: 150 SLNALLYVLCKRREGLVMVPQILLKSQAMNIRLEESSFRILVAALCRIKKHNYAIRILNY 209 Query: 822 MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643 M GY D+ + S ILS++C+ + +S EV F+EEMR F P VD NV+ FLVK Sbjct: 210 MLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLGFYPGRVDCNNVIRFLVKE 269 Query: 642 GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463 G MDAL + +QMK D IKPD V YT +L+GV GD++KA+++FDEMLVLGVVPD+H Y Sbjct: 270 GMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLVLGVVPDIHAY 329 Query: 462 NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283 NVY+ LC QN+ E G +++A M ELGCKPD TYN L+ + KV + +E+ +M L Sbjct: 330 NVYINSLCKQNNIEEGVRMLASMRELGCKPDYVTYNMLLEGMSKVRDLGGMRELAREMEL 389 Query: 282 KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103 +G+Q N +Y I+++GL+ +GE+ E+C E+ML + F T DE+IC LC+ GL + Sbjct: 390 EGVQWNWETYRIMLDGLVGKGEIDESCSLLEEMLDKYFSCWCSTFDEIICELCQRGLVCK 449 Query: 102 ALRILKQMVEMNIMPGVSAWEALL 31 AL+++ +MV I PG AWEALL Sbjct: 450 ALQLVNKMVRKTIAPGARAWEALL 473 Score = 60.5 bits (145), Expect = 6e-07 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 8/230 (3%) Frame = -1 Query: 693 TPNEVDYANVVSFLVKVGKGMDALDLMEQM-KLDRIKPDVVVYTCVLDGVITAGDFDKAE 517 TPN Y V+S L + + L+ ++ K+++ + ++T ++ A F+ A Sbjct: 76 TPNA--YRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNANMFEDAV 133 Query: 516 EVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLVACM----EELGCKPDVSTYNTL 349 ++F + VP V++ N L LC + G +V + + + + + S++ L Sbjct: 134 DLFFRIPNFRCVPSVYSLNALLYVLCKRRE---GLVMVPQILLKSQAMNIRLEESSFRIL 190 Query: 348 MGALCKVGKVMRAKEVLTKMRLKGLQRNLHSYSILINGLMCE--GEVG-EACEFWEDMLA 178 + ALC++ K A +L M G + SI+++ L CE G G E F E+M Sbjct: 191 VAALCRIKKHNYAIRILNYMLNDGYAVDAKMCSIILSSL-CEQKGLSGDEVLRFMEEMRK 249 Query: 177 RGFVPMSLTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALLS 28 GF P + C+ +I L K G+ +AL + QM I P ++ +L+ Sbjct: 250 LGFYPGRVDCNNVIRFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILN 299 >ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526239|gb|EEF28557.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 373 Score = 329 bits (844), Expect = 6e-88 Identities = 162/323 (50%), Positives = 227/323 (70%) Frame = -1 Query: 999 LNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDSM 820 LN LLSVLC+ EG+ V +VLLKS+ MNIR+EES+F +LI ALC + K+GYAVE+ + M Sbjct: 23 LNTLLSVLCRTNEGLNFVPEVLLKSQDMNIRMEESSFRLLINALCSINKVGYAVEMFNCM 82 Query: 819 SEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVG 640 G+ DS + S +LS++C D+SS EV FL E+R F P DY+ V++FLV+ G Sbjct: 83 INDGFSVDSKICSLLLSSLCYQADISSSEVMRFLGELRKFGFCPGIKDYSKVINFLVRRG 142 Query: 639 KGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYN 460 GM+AL+++ QMKLD IKPD+V YT VL+GVI G + KA+E+FDE+LV G+VPDV+TYN Sbjct: 143 MGMEALNVLNQMKLDGIKPDIVCYTTVLNGVIANGVYSKADELFDELLVFGLVPDVYTYN 202 Query: 459 VYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRLK 280 VY+ GLC QN+ EAG ++V MEELGCKP++ TYN L+ LCK G+ RA++++ M K Sbjct: 203 VYIYGLCKQNNVEAGIEMVTSMEELGCKPNLITYNILLEDLCKNGEDSRARDLVRDMGSK 262 Query: 279 GLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSEA 100 G+ + +Y ++I+GL G++ +AC E+ L +G P L DE+I GLC+ G +A Sbjct: 263 GIGLGMQTYKVMIHGLTSGGKIVKACSLLEEALDKGLCPRGLRFDEVIYGLCQTGSICKA 322 Query: 99 LRILKQMVEMNIMPGVSAWEALL 31 L +L+++V N+ PGV WE LL Sbjct: 323 LELLEKVVNKNVSPGVRVWETLL 345 >ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Glycine max] Length = 499 Score = 325 bits (833), Expect = 1e-86 Identities = 154/324 (47%), Positives = 233/324 (71%) Frame = -1 Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823 SLN +LS+LC++++ + +V ++LLKS+ MNIR+EESTF +LI ALC++K++GYA+++L+ Sbjct: 155 SLNLVLSLLCRKRDCLEMVPEILLKSQHMNIRVEESTFRVLIRALCRIKRVGYAIKMLNF 214 Query: 822 MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643 M E GY D + S ++SA+C+ +D++S E +MR F P +DY N++ FLVK Sbjct: 215 MVEDGYGLDEKICSLVISALCEQKDLTSAEALVVWRDMRKLGFCPGVMDYTNMIRFLVKE 274 Query: 642 GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463 G+GMDALD++ Q K D IK DVV YT VL G++ G++ +E+FDEMLV+G++PD +TY Sbjct: 275 GRGMDALDILNQQKQDGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTY 334 Query: 462 NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283 NVY+ GLC QN+ ++VA MEELGCKP+V TYNTL+GAL G ++A+E++ +M Sbjct: 335 NVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGALSVAGDFVKARELMKEMGW 394 Query: 282 KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103 KG+ NLH+Y I+++GL+ +GE+GE+C E+ML + P S T D +I +C+ L +E Sbjct: 395 KGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRSSTFDNIIFQMCQKDLFTE 454 Query: 102 ALRILKQMVEMNIMPGVSAWEALL 31 A+ + K++V + +PG S WEALL Sbjct: 455 AMELTKKVVAKSFLPGASTWEALL 478