BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027134
         (1005 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...   348   9e-94
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...   338   2e-90
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...   330   4e-88
ref|XP_002533822.1| pentatricopeptide repeat-containing protein,...   329   6e-88
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...   325   1e-86

>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
            predicted protein [Populus trichocarpa]
          Length = 506

 Score =  348 bits (894), Expect = 9e-94
 Identities = 167/324 (51%), Positives = 241/324 (74%)
 Frame = -1

Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823
            SLN L+SVLC+  +G+ LV ++LLKS+ MNIR+EESTF++LITALC+++K+G+A+E+L+ 
Sbjct: 150  SLNTLISVLCRNSKGLKLVPEILLKSQVMNIRVEESTFQVLITALCRVRKVGFAIEMLNC 209

Query: 822  MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643
            M   G+  ++ +YS +LS +C+ +D +  EV GFLE++R   F P  VDY+NV+ FLVK 
Sbjct: 210  MVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKG 269

Query: 642  GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463
             +G+DAL ++  MK DRIKPD+  YT VL GVI   D+ KA+E+FDE+LV G+VPD +TY
Sbjct: 270  KRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKADELFDELLVFGLVPDAYTY 329

Query: 462  NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283
            NVY+ GLC QN+ +AG K+VA MEELGCKP++ TYN L+  LCKVG++ +A E++ +M L
Sbjct: 330  NVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGELVREMGL 389

Query: 282  KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103
            KG+  N+ +Y I+I+GL   G++ EAC  +E+ L +G    SL  DE+ICGLC   L+ +
Sbjct: 390  KGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQSLMFDEIICGLCHRDLSCK 449

Query: 102  ALRILKQMVEMNIMPGVSAWEALL 31
            AL++L++MV  N+ PG  AW+ALL
Sbjct: 450  ALKLLEKMVGKNVSPGARAWKALL 473


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498545|gb|AES79748.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 653

 Score =  338 bits (866), Expect = 2e-90
 Identities = 166/327 (50%), Positives = 238/327 (72%), Gaps = 3/327 (0%)
 Frame = -1

Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823
            SLN LLS+LC ++E + +V  +LLKSR M IRLEES+F +LI ALC++K++ YA+++++ 
Sbjct: 149  SLNLLLSLLCGKRECLRMVPDILLKSRDMKIRLEESSFWVLIKALCRIKRVDYAIKMMNC 208

Query: 822  MSEYGYDPDSTLYSRILSAMCKLQDVSSVE---VWGFLEEMRAKRFTPNEVDYANVVSFL 652
            M E GY  D  + S I+S++C+  D++SVE   VWG    MR   F P  +D  N++ FL
Sbjct: 209  MVEDGYCLDDKICSLIISSLCEQNDLTSVEALVVWG---NMRKLGFCPGVMDCTNMIRFL 265

Query: 651  VKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDV 472
            VK GKGMDAL+++ Q+K D IKPD+V YT VL G++  GD+ K +E+FDE+LVLG+VPDV
Sbjct: 266  VKEGKGMDALEILNQLKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDV 325

Query: 471  HTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTK 292
            +TYNVY+ GLC QN+F+   K+V  ME+LGCKP+V TYNTL+GALC  G + +AK V+ +
Sbjct: 326  YTYNVYINGLCKQNNFDEALKIVVSMEKLGCKPNVVTYNTLLGALCMSGDLGKAKRVMKE 385

Query: 291  MRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGL 112
            MRLKG++ NLH+Y I+++GL+ +GE+GEAC   E+ML + F P S T D ++  +C+ GL
Sbjct: 386  MRLKGVELNLHTYRIMLDGLVGKGEIGEACVLLEEMLEKCFYPRSSTFDSIVHQMCQKGL 445

Query: 111  NSEALRILKQMVEMNIMPGVSAWEALL 31
             S+AL ++ ++V  +  PG   WEALL
Sbjct: 446  ISDALVLMNKIVAKSFDPGAKVWEALL 472


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
            mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  330 bits (845), Expect = 4e-88
 Identities = 167/324 (51%), Positives = 227/324 (70%)
 Frame = -1

Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823
            SLNALL VLCKR+EG+ +V Q+LLKS+ MNIRLEES+F IL+ ALC++KK  YA+ IL+ 
Sbjct: 150  SLNALLYVLCKRREGLVMVPQILLKSQAMNIRLEESSFRILVAALCRIKKHNYAIRILNY 209

Query: 822  MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643
            M   GY  D+ + S ILS++C+ + +S  EV  F+EEMR   F P  VD  NV+ FLVK 
Sbjct: 210  MLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLGFYPGRVDCNNVIRFLVKE 269

Query: 642  GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463
            G  MDAL + +QMK D IKPD V YT +L+GV   GD++KA+++FDEMLVLGVVPD+H Y
Sbjct: 270  GMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLVLGVVPDIHAY 329

Query: 462  NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283
            NVY+  LC QN+ E G +++A M ELGCKPD  TYN L+  + KV  +   +E+  +M L
Sbjct: 330  NVYINSLCKQNNIEEGVRMLASMRELGCKPDYVTYNMLLEGMSKVRDLGGMRELAREMEL 389

Query: 282  KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103
            +G+Q N  +Y I+++GL+ +GE+ E+C   E+ML + F     T DE+IC LC+ GL  +
Sbjct: 390  EGVQWNWETYRIMLDGLVGKGEIDESCSLLEEMLDKYFSCWCSTFDEIICELCQRGLVCK 449

Query: 102  ALRILKQMVEMNIMPGVSAWEALL 31
            AL+++ +MV   I PG  AWEALL
Sbjct: 450  ALQLVNKMVRKTIAPGARAWEALL 473



 Score = 60.5 bits (145), Expect = 6e-07
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
 Frame = -1

Query: 693 TPNEVDYANVVSFLVKVGKGMDALDLMEQM-KLDRIKPDVVVYTCVLDGVITAGDFDKAE 517
           TPN   Y  V+S L +  +      L+ ++ K+++ +    ++T ++     A  F+ A 
Sbjct: 76  TPNA--YRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNANMFEDAV 133

Query: 516 EVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLVACM----EELGCKPDVSTYNTL 349
           ++F  +     VP V++ N  L  LC +     G  +V  +    + +  + + S++  L
Sbjct: 134 DLFFRIPNFRCVPSVYSLNALLYVLCKRRE---GLVMVPQILLKSQAMNIRLEESSFRIL 190

Query: 348 MGALCKVGKVMRAKEVLTKMRLKGLQRNLHSYSILINGLMCE--GEVG-EACEFWEDMLA 178
           + ALC++ K   A  +L  M   G   +    SI+++ L CE  G  G E   F E+M  
Sbjct: 191 VAALCRIKKHNYAIRILNYMLNDGYAVDAKMCSIILSSL-CEQKGLSGDEVLRFMEEMRK 249

Query: 177 RGFVPMSLTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALLS 28
            GF P  + C+ +I  L K G+  +AL +  QM    I P   ++  +L+
Sbjct: 250 LGFYPGRVDCNNVIRFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILN 299


>ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526239|gb|EEF28557.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 373

 Score =  329 bits (844), Expect = 6e-88
 Identities = 162/323 (50%), Positives = 227/323 (70%)
 Frame = -1

Query: 999 LNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDSM 820
           LN LLSVLC+  EG+  V +VLLKS+ MNIR+EES+F +LI ALC + K+GYAVE+ + M
Sbjct: 23  LNTLLSVLCRTNEGLNFVPEVLLKSQDMNIRMEESSFRLLINALCSINKVGYAVEMFNCM 82

Query: 819 SEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVG 640
              G+  DS + S +LS++C   D+SS EV  FL E+R   F P   DY+ V++FLV+ G
Sbjct: 83  INDGFSVDSKICSLLLSSLCYQADISSSEVMRFLGELRKFGFCPGIKDYSKVINFLVRRG 142

Query: 639 KGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYN 460
            GM+AL+++ QMKLD IKPD+V YT VL+GVI  G + KA+E+FDE+LV G+VPDV+TYN
Sbjct: 143 MGMEALNVLNQMKLDGIKPDIVCYTTVLNGVIANGVYSKADELFDELLVFGLVPDVYTYN 202

Query: 459 VYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRLK 280
           VY+ GLC QN+ EAG ++V  MEELGCKP++ TYN L+  LCK G+  RA++++  M  K
Sbjct: 203 VYIYGLCKQNNVEAGIEMVTSMEELGCKPNLITYNILLEDLCKNGEDSRARDLVRDMGSK 262

Query: 279 GLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSEA 100
           G+   + +Y ++I+GL   G++ +AC   E+ L +G  P  L  DE+I GLC+ G   +A
Sbjct: 263 GIGLGMQTYKVMIHGLTSGGKIVKACSLLEEALDKGLCPRGLRFDEVIYGLCQTGSICKA 322

Query: 99  LRILKQMVEMNIMPGVSAWEALL 31
           L +L+++V  N+ PGV  WE LL
Sbjct: 323 LELLEKVVNKNVSPGVRVWETLL 345


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
            mitochondrial-like [Glycine max]
          Length = 499

 Score =  325 bits (833), Expect = 1e-86
 Identities = 154/324 (47%), Positives = 233/324 (71%)
 Frame = -1

Query: 1002 SLNALLSVLCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILITALCKLKKIGYAVEILDS 823
            SLN +LS+LC++++ + +V ++LLKS+ MNIR+EESTF +LI ALC++K++GYA+++L+ 
Sbjct: 155  SLNLVLSLLCRKRDCLEMVPEILLKSQHMNIRVEESTFRVLIRALCRIKRVGYAIKMLNF 214

Query: 822  MSEYGYDPDSTLYSRILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKV 643
            M E GY  D  + S ++SA+C+ +D++S E      +MR   F P  +DY N++ FLVK 
Sbjct: 215  MVEDGYGLDEKICSLVISALCEQKDLTSAEALVVWRDMRKLGFCPGVMDYTNMIRFLVKE 274

Query: 642  GKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTY 463
            G+GMDALD++ Q K D IK DVV YT VL G++  G++   +E+FDEMLV+G++PD +TY
Sbjct: 275  GRGMDALDILNQQKQDGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTY 334

Query: 462  NVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVLTKMRL 283
            NVY+ GLC QN+     ++VA MEELGCKP+V TYNTL+GAL   G  ++A+E++ +M  
Sbjct: 335  NVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGALSVAGDFVKARELMKEMGW 394

Query: 282  KGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGLCKLGLNSE 103
            KG+  NLH+Y I+++GL+ +GE+GE+C   E+ML +   P S T D +I  +C+  L +E
Sbjct: 395  KGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRSSTFDNIIFQMCQKDLFTE 454

Query: 102  ALRILKQMVEMNIMPGVSAWEALL 31
            A+ + K++V  + +PG S WEALL
Sbjct: 455  AMELTKKVVAKSFLPGASTWEALL 478