BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027132
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   201   4e-50
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   187   6e-46
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   185   4e-45
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ...   185   4e-45
ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containi...   184   9e-45

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  201 bits (512), Expect = 4e-50
 Identities = 98/107 (91%), Positives = 103/107 (96%)
 Frame = +1

Query: 1   EMKSLGVKPNLVVFNTLLEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKAR 180
           EMKSLGV+PNLVV+NTLLEAMGKAGKPGLARSLFEEMVG+GV+P+ KTLTALVKIYGKAR
Sbjct: 329 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKAR 388

Query: 181 WGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFGDM 321
           W RDAL LWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLF DM
Sbjct: 389 WARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDM 435


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  187 bits (476), Expect = 6e-46
 Identities = 89/107 (83%), Positives = 99/107 (92%)
 Frame = +1

Query: 1   EMKSLGVKPNLVVFNTLLEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKAR 180
           EMKS+ ++PNLVV+NTLL+AMGKAGKPG ARSLF+EMV +G+ PNEKTLTALVKIYGKAR
Sbjct: 315 EMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKAR 374

Query: 181 WGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFGDM 321
           W RDAL LWERMRSNGWPMDFILYNTLL+MCADLGLEEEAE LF +M
Sbjct: 375 WARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEM 421


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score =  185 bits (469), Expect = 4e-45
 Identities = 88/107 (82%), Positives = 98/107 (91%)
 Frame = +1

Query: 1   EMKSLGVKPNLVVFNTLLEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKAR 180
           EMKSL V+PN+VV+NTLLEAMGKAGKPGLARSLF+EMV +G+ PNEKTLTAL KIYGKAR
Sbjct: 327 EMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPNEKTLTALAKIYGKAR 386

Query: 181 WGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFGDM 321
           W +DA+ LWERMRSN WPMDFILYNTLLSMCADLG+E+EAE LF DM
Sbjct: 387 WAKDAMELWERMRSNDWPMDFILYNTLLSMCADLGMEKEAETLFEDM 433


>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509692|gb|AES90834.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  185 bits (469), Expect = 4e-45
 Identities = 86/107 (80%), Positives = 98/107 (91%)
 Frame = +1

Query: 1   EMKSLGVKPNLVVFNTLLEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKAR 180
           EMKSLGV+PNLVV+NTLLEAMGKAGKPG ARSLFEEM+ +G+ PNEKTLTA++KIYGKAR
Sbjct: 320 EMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKAR 379

Query: 181 WGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFGDM 321
           W +DAL LW+RM+ NGWPMDFILYNTLL+MCAD+GL EEAE LF DM
Sbjct: 380 WSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDM 426


>ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score =  184 bits (466), Expect = 9e-45
 Identities = 85/107 (79%), Positives = 98/107 (91%)
 Frame = +1

Query: 1   EMKSLGVKPNLVVFNTLLEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKAR 180
           EM+S+GV+PNLVV+NTLLEAMGKAGKPG AR LFEEM+ +G+VPNEKTLTA++KIYGKAR
Sbjct: 319 EMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKAR 378

Query: 181 WGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFGDM 321
           W RDAL LW+RM+ NGWPMDFILYNTLL+MCAD+GL EEAE LF DM
Sbjct: 379 WSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDM 425