BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027074
         (607 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   253   2e-65
gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...   242   3e-62
ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2...   238   5e-61
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...   238   6e-61
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...   238   6e-61

>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  253 bits (645), Expect = 2e-65
 Identities = 122/201 (60%), Positives = 147/201 (73%)
 Frame = +2

Query: 5   YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184
           +Y++M    + QSN+TFTAVIKACAD+SAL  GR IH+HV   G   D ++QAALI FYA
Sbjct: 104 FYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYA 163

Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364
           KSG +G A+ VFD+M ER+I+AWN+M+SGY+QNGF  EAV +FY MR LGVE DSAT V 
Sbjct: 164 KSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVS 223

Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544
                          W HDY+V    DVNV+LGTSL+NMY RCGNV KAREVF+ M  RN
Sbjct: 224 VLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERN 283

Query: 545 VMTWTSMISGYGMHGYGKEAI 607
           V+ WT+MISGYGMHGYG+EAI
Sbjct: 284 VVAWTAMISGYGMHGYGREAI 304



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 43/113 (38%), Positives = 72/113 (63%)
 Frame = +2

Query: 8   YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187
           + +MR +G+   + TF +V+ AC+   AL  G  +H ++ ++    +  +  +LI  Y +
Sbjct: 206 FYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTR 265

Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPD 346
            G++  AR VFD+M+ER++VAW AM+SGY  +G+G EA+E+F LMR  G+  D
Sbjct: 266 CGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGMRQD 318


>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score =  242 bits (618), Expect = 3e-62
 Identities = 109/200 (54%), Positives = 149/200 (74%)
 Frame = +2

Query: 8   YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187
           Y++M +  +  SN+TF+AVIK+ AD++A   G  IH HV+  G G D Y+QAAL++FYAK
Sbjct: 106 YRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAK 165

Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXX 367
           SGH+ +AR VFD+M E+++VAWN+M+SGYEQNGFG EAVE+F+LM+ LGV+PDS+T V  
Sbjct: 166 SGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSL 225

Query: 368 XXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRNV 547
                         W H+Y+     D+NV+LGT+L+NMY+RCGNV KAREVF+ M  +N+
Sbjct: 226 LSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNI 285

Query: 548 MTWTSMISGYGMHGYGKEAI 607
           + WT+MISGYGMHG+G +AI
Sbjct: 286 VAWTAMISGYGMHGHGSQAI 305



 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 3/193 (1%)
 Frame = +2

Query: 17  MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196
           M+ +G+   + TF +++ ACA V A+G G  +H ++  +    +  +  AL+  Y++ G+
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376
           +  AR VFD M E++IVAW AM+SGY  +G G++A+E+F  M   G  P++ T V     
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 377 XXXXXXXXXXRWAHDYV-VERGLDVNVILGTSLVNMYARCGNVGKARE-VFNGMPLRNV- 547
                     R     +  E GL  +V     +V+M  R G++ +A + + N  P     
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389

Query: 548 MTWTSMISGYGMH 586
             WT+M+    MH
Sbjct: 390 AVWTAMLGACKMH 402


>ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1|
           predicted protein [Populus trichocarpa]
          Length = 585

 Score =  238 bits (608), Expect = 5e-61
 Identities = 113/201 (56%), Positives = 143/201 (71%)
 Frame = +2

Query: 5   YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184
           +Y +M +  +  SN+TFT+VIK+CAD+SAL +GRV+H HV   G G D Y+QAAL+  Y 
Sbjct: 98  FYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYG 157

Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364
           K G L  AR VFD++ ERSIVAWN+M+SGYEQNGF  EA+ +F  M+  GVEPDSAT V 
Sbjct: 158 KCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVS 217

Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544
                          W H+Y+V  GLD+NV+LGTSL+NMY RCGNV KAREVF+ M  RN
Sbjct: 218 VLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERN 277

Query: 545 VMTWTSMISGYGMHGYGKEAI 607
           V+ WT+MISGYG +GYG +A+
Sbjct: 278 VVAWTAMISGYGTNGYGSQAV 298



 Score =  104 bits (259), Expect = 1e-20
 Identities = 48/118 (40%), Positives = 76/118 (64%)
 Frame = +2

Query: 8   YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187
           + +M+  G+   + TF +V+ ACA + A   G  +H ++  +GL  +  +  +LI  Y +
Sbjct: 200 FDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIR 259

Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIV 361
            G++  AR VFD M ER++VAW AM+SGY  NG+G++AVE+F+ MRR G+ P+S T V
Sbjct: 260 CGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFV 317


>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  238 bits (607), Expect = 6e-61
 Identities = 111/201 (55%), Positives = 144/201 (71%)
 Frame = +2

Query: 5   YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184
           +Y++M   G  QSN+TFT+VIKACAD+SAL  G+ IH+HV   G G D Y+QAALI  YA
Sbjct: 176 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 235

Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364
           K+  + VA+ VFD M +R+I+AWN+++SGY+QNG   E++ +F+LM   G +PDSATIV 
Sbjct: 236 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 295

Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544
                          W HDY    G D+NV+LGTSL+NMY RCGNV KAREVF+ M  RN
Sbjct: 296 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 355

Query: 545 VMTWTSMISGYGMHGYGKEAI 607
           V+TWT+MISGYGMHGYG++A+
Sbjct: 356 VVTWTAMISGYGMHGYGRQAM 376



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 3/193 (1%)
 Frame = +2

Query: 17  MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196
           M   G    + T  +++ +C+ + AL +G  +H +   +G   +  +  +LI  Y + G+
Sbjct: 281 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 340

Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376
           +  AR VFD M ER++V W AM+SGY  +G+G +A+E+F  MR  G  P++ T V     
Sbjct: 341 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA 400

Query: 377 XXXXXXXXXXRWAHDYVVER-GLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLR--NV 547
                     R     + E  GL   V     +V+M+ R G +  A +       +    
Sbjct: 401 CAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP 460

Query: 548 MTWTSMISGYGMH 586
             WTSM+    MH
Sbjct: 461 AVWTSMLGACRMH 473



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 40/166 (24%), Positives = 78/166 (46%)
 Frame = +2

Query: 110 IHAHVFSSGLGQDFYIQAALITFYAKSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGF 289
           +HAH+  SGL +   +   LI+    +G +  AR +F  +       ++++L    + GF
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169

Query: 290 GNEAVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTS 469
             + V  +  M   G    + T                 +  H +V+  G   ++ +  +
Sbjct: 170 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 229

Query: 470 LVNMYARCGNVGKAREVFNGMPLRNVMTWTSMISGYGMHGYGKEAI 607
           L+ +YA+  ++  A++VF+ MP R ++ W S+ISGY  +G  +E+I
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESI 275


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  238 bits (607), Expect = 6e-61
 Identities = 111/201 (55%), Positives = 144/201 (71%)
 Frame = +2

Query: 5   YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184
           +Y++M   G  QSN+TFT+VIKACAD+SAL  G+ IH+HV   G G D Y+QAALI  YA
Sbjct: 112 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 171

Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364
           K+  + VA+ VFD M +R+I+AWN+++SGY+QNG   E++ +F+LM   G +PDSATIV 
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 231

Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544
                          W HDY    G D+NV+LGTSL+NMY RCGNV KAREVF+ M  RN
Sbjct: 232 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 291

Query: 545 VMTWTSMISGYGMHGYGKEAI 607
           V+TWT+MISGYGMHGYG++A+
Sbjct: 292 VVTWTAMISGYGMHGYGRQAM 312



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 3/193 (1%)
 Frame = +2

Query: 17  MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196
           M   G    + T  +++ +C+ + AL +G  +H +   +G   +  +  +LI  Y + G+
Sbjct: 217 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 276

Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376
           +  AR VFD M ER++V W AM+SGY  +G+G +A+E+F  MR  G  P++ T V     
Sbjct: 277 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA 336

Query: 377 XXXXXXXXXXRWAHDYVVER-GLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLR--NV 547
                     R     + E  GL   V     +V+M+ R G +  A +       +    
Sbjct: 337 CAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP 396

Query: 548 MTWTSMISGYGMH 586
             WTSM+    MH
Sbjct: 397 AVWTSMLGACRMH 409



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 40/166 (24%), Positives = 78/166 (46%)
 Frame = +2

Query: 110 IHAHVFSSGLGQDFYIQAALITFYAKSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGF 289
           +HAH+  SGL +   +   LI+    +G +  AR +F  +       ++++L    + GF
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105

Query: 290 GNEAVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTS 469
             + V  +  M   G    + T                 +  H +V+  G   ++ +  +
Sbjct: 106 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 165

Query: 470 LVNMYARCGNVGKAREVFNGMPLRNVMTWTSMISGYGMHGYGKEAI 607
           L+ +YA+  ++  A++VF+ MP R ++ W S+ISGY  +G  +E+I
Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESI 211