BLASTX nr result
ID: Coptis25_contig00027074
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00027074 (607 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 253 2e-65 gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu... 242 3e-62 ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2... 238 5e-61 ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi... 238 6e-61 ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi... 238 6e-61 >ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera] Length = 561 Score = 253 bits (645), Expect = 2e-65 Identities = 122/201 (60%), Positives = 147/201 (73%) Frame = +2 Query: 5 YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184 +Y++M + QSN+TFTAVIKACAD+SAL GR IH+HV G D ++QAALI FYA Sbjct: 104 FYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYA 163 Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364 KSG +G A+ VFD+M ER+I+AWN+M+SGY+QNGF EAV +FY MR LGVE DSAT V Sbjct: 164 KSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVS 223 Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544 W HDY+V DVNV+LGTSL+NMY RCGNV KAREVF+ M RN Sbjct: 224 VLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERN 283 Query: 545 VMTWTSMISGYGMHGYGKEAI 607 V+ WT+MISGYGMHGYG+EAI Sbjct: 284 VVAWTAMISGYGMHGYGREAI 304 Score = 94.7 bits (234), Expect = 1e-17 Identities = 43/113 (38%), Positives = 72/113 (63%) Frame = +2 Query: 8 YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187 + +MR +G+ + TF +V+ AC+ AL G +H ++ ++ + + +LI Y + Sbjct: 206 FYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTR 265 Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPD 346 G++ AR VFD+M+ER++VAW AM+SGY +G+G EA+E+F LMR G+ D Sbjct: 266 CGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGMRQD 318 >gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum] Length = 592 Score = 242 bits (618), Expect = 3e-62 Identities = 109/200 (54%), Positives = 149/200 (74%) Frame = +2 Query: 8 YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187 Y++M + + SN+TF+AVIK+ AD++A G IH HV+ G G D Y+QAAL++FYAK Sbjct: 106 YRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAK 165 Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXX 367 SGH+ +AR VFD+M E+++VAWN+M+SGYEQNGFG EAVE+F+LM+ LGV+PDS+T V Sbjct: 166 SGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSL 225 Query: 368 XXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRNV 547 W H+Y+ D+NV+LGT+L+NMY+RCGNV KAREVF+ M +N+ Sbjct: 226 LSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNI 285 Query: 548 MTWTSMISGYGMHGYGKEAI 607 + WT+MISGYGMHG+G +AI Sbjct: 286 VAWTAMISGYGMHGHGSQAI 305 Score = 95.9 bits (237), Expect = 5e-18 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 3/193 (1%) Frame = +2 Query: 17 MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196 M+ +G+ + TF +++ ACA V A+G G +H ++ + + + AL+ Y++ G+ Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269 Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376 + AR VFD M E++IVAW AM+SGY +G G++A+E+F M G P++ T V Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329 Query: 377 XXXXXXXXXXRWAHDYV-VERGLDVNVILGTSLVNMYARCGNVGKARE-VFNGMPLRNV- 547 R + E GL +V +V+M R G++ +A + + N P Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389 Query: 548 MTWTSMISGYGMH 586 WT+M+ MH Sbjct: 390 AVWTAMLGACKMH 402 >ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa] Length = 585 Score = 238 bits (608), Expect = 5e-61 Identities = 113/201 (56%), Positives = 143/201 (71%) Frame = +2 Query: 5 YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184 +Y +M + + SN+TFT+VIK+CAD+SAL +GRV+H HV G G D Y+QAAL+ Y Sbjct: 98 FYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYG 157 Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364 K G L AR VFD++ ERSIVAWN+M+SGYEQNGF EA+ +F M+ GVEPDSAT V Sbjct: 158 KCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVS 217 Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544 W H+Y+V GLD+NV+LGTSL+NMY RCGNV KAREVF+ M RN Sbjct: 218 VLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERN 277 Query: 545 VMTWTSMISGYGMHGYGKEAI 607 V+ WT+MISGYG +GYG +A+ Sbjct: 278 VVAWTAMISGYGTNGYGSQAV 298 Score = 104 bits (259), Expect = 1e-20 Identities = 48/118 (40%), Positives = 76/118 (64%) Frame = +2 Query: 8 YKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAK 187 + +M+ G+ + TF +V+ ACA + A G +H ++ +GL + + +LI Y + Sbjct: 200 FDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIR 259 Query: 188 SGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIV 361 G++ AR VFD M ER++VAW AM+SGY NG+G++AVE+F+ MRR G+ P+S T V Sbjct: 260 CGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFV 317 >ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] Length = 663 Score = 238 bits (607), Expect = 6e-61 Identities = 111/201 (55%), Positives = 144/201 (71%) Frame = +2 Query: 5 YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184 +Y++M G QSN+TFT+VIKACAD+SAL G+ IH+HV G G D Y+QAALI YA Sbjct: 176 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 235 Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364 K+ + VA+ VFD M +R+I+AWN+++SGY+QNG E++ +F+LM G +PDSATIV Sbjct: 236 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 295 Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544 W HDY G D+NV+LGTSL+NMY RCGNV KAREVF+ M RN Sbjct: 296 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 355 Query: 545 VMTWTSMISGYGMHGYGKEAI 607 V+TWT+MISGYGMHGYG++A+ Sbjct: 356 VVTWTAMISGYGMHGYGRQAM 376 Score = 92.8 bits (229), Expect = 4e-17 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 3/193 (1%) Frame = +2 Query: 17 MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196 M G + T +++ +C+ + AL +G +H + +G + + +LI Y + G+ Sbjct: 281 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 340 Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376 + AR VFD M ER++V W AM+SGY +G+G +A+E+F MR G P++ T V Sbjct: 341 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA 400 Query: 377 XXXXXXXXXXRWAHDYVVER-GLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLR--NV 547 R + E GL V +V+M+ R G + A + + Sbjct: 401 CAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP 460 Query: 548 MTWTSMISGYGMH 586 WTSM+ MH Sbjct: 461 AVWTSMLGACRMH 473 Score = 70.9 bits (172), Expect = 2e-10 Identities = 40/166 (24%), Positives = 78/166 (46%) Frame = +2 Query: 110 IHAHVFSSGLGQDFYIQAALITFYAKSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGF 289 +HAH+ SGL + + LI+ +G + AR +F + ++++L + GF Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169 Query: 290 GNEAVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTS 469 + V + M G + T + H +V+ G ++ + + Sbjct: 170 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 229 Query: 470 LVNMYARCGNVGKAREVFNGMPLRNVMTWTSMISGYGMHGYGKEAI 607 L+ +YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESI 275 >ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] Length = 599 Score = 238 bits (607), Expect = 6e-61 Identities = 111/201 (55%), Positives = 144/201 (71%) Frame = +2 Query: 5 YYKQMRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYA 184 +Y++M G QSN+TFT+VIKACAD+SAL G+ IH+HV G G D Y+QAALI YA Sbjct: 112 FYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 171 Query: 185 KSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVX 364 K+ + VA+ VFD M +R+I+AWN+++SGY+QNG E++ +F+LM G +PDSATIV Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 231 Query: 365 XXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLRN 544 W HDY G D+NV+LGTSL+NMY RCGNV KAREVF+ M RN Sbjct: 232 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 291 Query: 545 VMTWTSMISGYGMHGYGKEAI 607 V+TWT+MISGYGMHGYG++A+ Sbjct: 292 VVTWTAMISGYGMHGYGRQAM 312 Score = 92.8 bits (229), Expect = 4e-17 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 3/193 (1%) Frame = +2 Query: 17 MRVMGLHQSNFTFTAVIKACADVSALGYGRVIHAHVFSSGLGQDFYIQAALITFYAKSGH 196 M G + T +++ +C+ + AL +G +H + +G + + +LI Y + G+ Sbjct: 217 MMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 276 Query: 197 LGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEIFYLMRRLGVEPDSATIVXXXXX 376 + AR VFD M ER++V W AM+SGY +G+G +A+E+F MR G P++ T V Sbjct: 277 VSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA 336 Query: 377 XXXXXXXXXXRWAHDYVVER-GLDVNVILGTSLVNMYARCGNVGKAREVFNGMPLR--NV 547 R + E GL V +V+M+ R G + A + + Sbjct: 337 CAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP 396 Query: 548 MTWTSMISGYGMH 586 WTSM+ MH Sbjct: 397 AVWTSMLGACRMH 409 Score = 70.9 bits (172), Expect = 2e-10 Identities = 40/166 (24%), Positives = 78/166 (46%) Frame = +2 Query: 110 IHAHVFSSGLGQDFYIQAALITFYAKSGHLGVARMVFDQMSERSIVAWNAMLSGYEQNGF 289 +HAH+ SGL + + LI+ +G + AR +F + ++++L + GF Sbjct: 46 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105 Query: 290 GNEAVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXXRWAHDYVVERGLDVNVILGTS 469 + V + M G + T + H +V+ G ++ + + Sbjct: 106 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 165 Query: 470 LVNMYARCGNVGKAREVFNGMPLRNVMTWTSMISGYGMHGYGKEAI 607 L+ +YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESI 211