BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027047
         (903 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   301   2e-79
ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containi...   299   7e-79
ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containi...   299   7e-79
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   290   2e-76
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   268   2e-69

>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  301 bits (770), Expect = 2e-79
 Identities = 154/296 (52%), Positives = 197/296 (66%), Gaps = 2/296 (0%)
 Frame = -2

Query: 884 SKTLSTSAISYTSSQNLSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQ 705
           S +++T  +S   S   S + S+QNLLK GFTPTLK++N +L FL K +    + +  SQ
Sbjct: 4   STSVTTIKLSRYFSSFSSASSSIQNLLKRGFTPTLKSINQYLLFLVKIHKFTLVPHFLSQ 63

Query: 704 MNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKG--ICDSLIQGLISP 531
           +N N I+GN QTHS+    L+K   +EEAEHF+           KG    DSLIQ + + 
Sbjct: 64  LNQNQIEGNYQTHSLFLLALLKLKNFEEAEHFIKTHRAKSSSSSKGHKFLDSLIQAISTD 123

Query: 530 GESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFD 351
            + P +A  VL  CL+  GM PS FTFC ++HSF   GNM   I+VLELM+ E   YPF 
Sbjct: 124 EKDPNKALLVLHDCLRNYGMLPSSFTFCSVIHSFVLQGNMSGAIQVLELMNDEKINYPFC 183

Query: 350 NFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCEL 171
           NFVCSS++SGFCK+GKPELA+GF++N  K G L+ PN+VTYTA+VS+LC  GR  EV +L
Sbjct: 184 NFVCSSIVSGFCKMGKPELAMGFFENSLKLGALK-PNLVTYTAVVSSLCMLGRADEVFDL 242

Query: 170 VHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           V +ME EG+  D VFYS WICGYF  GV  EA RKH+EM+ KGI  DT+ YTILID
Sbjct: 243 VCEMEEEGLAFDVVFYSCWICGYFRNGVFIEAIRKHKEMVKKGISSDTIGYTILID 298



 Score = 90.9 bits (224), Expect = 4e-16
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
 Frame = -2

Query: 566 ICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLE 387
           +C S++ G    G+ PE A    +  LK   + P+  T+  +V S    G  D V +++ 
Sbjct: 186 VCSSIVSGFCKMGK-PELAMGFFENSLKLGALKPNLVTYTAVVSSLCMLGRADEVFDLVC 244

Query: 386 LMSGENFRYPFDNFVC---------------------------------SSVISGFCKIG 306
            M  E   +    + C                                 + +I GF K G
Sbjct: 245 EMEEEGLAFDVVFYSCWICGYFRNGVFIEAIRKHKEMVKKGISSDTIGYTILIDGFSKEG 304

Query: 305 KPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVF 126
             E ++GF  ++  +G    PN+VTYTAI+   C++G++ E   +   +EN G+ LD   
Sbjct: 305 SVEKSVGFLHHMLANGSE--PNLVTYTAIILGFCRKGKIDEAFAIFKLVENLGIKLDEFI 362

Query: 125 YSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           Y+  + G+  KG  D A++   EM  KGI P  V+Y ILI+
Sbjct: 363 YAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNILIN 403



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 5/275 (1%)
 Frame = -2

Query: 815 QNLLKSG-FTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVK 639
           +N LK G   P L T    +S L      + +  L  +M    +  +   +S       +
Sbjct: 208 ENSLKLGALKPNLVTYTAVVSSLCMLGRADEVFDLVCEMEEEGLAFDVVFYSCWICGYFR 267

Query: 638 ANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSR 459
              + EA     +M+K G          LI G    G S E++   L   L   G  P+ 
Sbjct: 268 NGVFIEAIRKHKEMVKKGISSDTIGYTILIDGFSKEG-SVEKSVGFLHHMLA-NGSEPNL 325

Query: 458 FTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPELALGFY 279
            T+  ++  F   G +D    + +L+  EN     D F+ + ++ GFC  G  + A    
Sbjct: 326 VTYTAIILGFCRKGKIDEAFAIFKLV--ENLGIKLDEFIYAILVDGFCLKGDFDRAYQLI 383

Query: 278 DNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYF 99
           + +EK G+   P +V Y  ++++LCK GR  +  E+   ++      D + YS+ + GY 
Sbjct: 384 EEMEKKGI--TPTIVAYNILINSLCKAGRTFDADEVSKALQG-----DKITYSALLHGYI 436

Query: 98  EK----GVLDEAFRKHREMLCKGIKPDTVSYTILI 6
           ++    G+L+   R         I+ D + + I++
Sbjct: 437 KEENSIGILEVRQRLEEAR----IQMDIIMFNIIL 467



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 62/292 (21%), Positives = 121/292 (41%), Gaps = 8/292 (2%)
 Frame = -2

Query: 881  KTLSTSAISYT-------SSQNLSKTLS-LQNLLKSGFTPTLKTLNHFLSFLSKSNHLNF 726
            K +S+  I YT          ++ K++  L ++L +G  P L T    +    +   ++ 
Sbjct: 284  KGISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKGKIDE 343

Query: 725  LLYLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQ 546
               +F  +    IK +   ++I+         ++ A   + +M K G  P     + LI 
Sbjct: 344  AFAIFKLVENLGIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNILIN 403

Query: 545  GLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENF 366
             L   G    R F   +     +G    + T+  L+H +    N   ++EV + +  E  
Sbjct: 404  SLCKAG----RTFDADEVSKALQG---DKITYSALLHGYIKEENSIGILEVRQRL--EEA 454

Query: 365  RYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVK 186
            R   D  + + ++     +G  E  L  Y+ +++  ++   N +TY  I+   CK GR+ 
Sbjct: 455  RIQMDIIMFNIILKALFVVGAFEDVLVLYNGMQEMNLVA--NSITYCTIIGGFCKVGRID 512

Query: 185  EVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPD 30
            E  E+  +  + G+      Y+  I G  + G++D A     E++ KG+  D
Sbjct: 513  EALEIFDEFRH-GLGSSVACYNCMINGLCKNGMVDMAAEIFVELIEKGLTLD 563


>ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1061

 Score =  299 bits (765), Expect = 7e-79
 Identities = 149/286 (52%), Positives = 204/286 (71%), Gaps = 2/286 (0%)
 Frame = -2

Query: 857 SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKG 681
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++ F Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 680 NSQTHSIITRTLVKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 504
           NS+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 503 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVIS 324
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  YPFDNFVCSSVIS
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNYPFDNFVCSSVIS 194

Query: 323 GFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGV 144
           GFC IGKPELAL F++N +  G L+ PN+VTYTA++ ALCK  RV +V +LV +ME E +
Sbjct: 195 GFCNIGKPELALKFFENAKTLGNLK-PNLVTYTAVIGALCKLHRVNQVSDLVCEMEKENL 253

Query: 143 VLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILI 6
             D VFYS WICGY  +G+L +AF+++REM+ KGI+PDT+S TILI
Sbjct: 254 AFDVVFYSCWICGYIAEGMLLDAFKRNREMVQKGIRPDTISCTILI 299



 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 66/261 (25%), Positives = 118/261 (45%)
 Frame = -2

Query: 788 PTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHF 609
           P L T    +  L K + +N +  L  +M   N+  +   +S      +      +A   
Sbjct: 220 PNLVTYTAVIGALCKLHRVNQVSDLVCEMEKENLAFDVVFYSCWICGYIAEGMLLDAFKR 279

Query: 608 MTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSF 429
             +M++ G  P    C  LI GL   G + E+AF VL++  K  G+  S  T+ +++  F
Sbjct: 280 NREMVQKGIRPDTISCTILIYGLSKLG-NVEKAFGVLERMRK-SGLELSSVTYTVIMLGF 337

Query: 428 SCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLR 249
              G ++    + E++ G       D F+ +++I G C+ G  +   G  D +E  G+  
Sbjct: 338 CKKGKLEEAFSLFEMVKG--LEMEVDEFMYATLIDGCCRKGDFDRVFGLLDEMETRGMKS 395

Query: 248 CPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFR 69
             ++VTY  +++ LCK GR  E   L     ++G+  D + YS+ + GY ++  +   F 
Sbjct: 396 --SIVTYNTVINGLCKWGRTSEADRL-----SKGLHGDVITYSTLLHGYIQEQNITGIFE 448

Query: 68  KHREMLCKGIKPDTVSYTILI 6
             R +   GI  D +   +LI
Sbjct: 449 TKRRLEDAGISLDVIMCNVLI 469



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 11/268 (4%)
 Frame = -2

Query: 776  TLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQM 597
            T N  + FL K          +S+M    +    +T   + + L       E + ++++ 
Sbjct: 603  TCNDAIRFLCKRGFSEMASEFYSRMMRTRLLLEKKTFYFLIKAL-----NSEGKTWISRP 657

Query: 596  LKDGHFPQKGICDSLIQGLI----------SPGESPERAFSVLQQCLKFRGMSPSRFTFC 447
            +      + G+ D +++ +I             E  E +FS   +      +    F + 
Sbjct: 658  IFSNFLKEYGLFDPIVKQIIVDFECTKFTLPTSEKMEESFSRFMRGNNL--LLGDVFDYS 715

Query: 446  MLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSS-VISGFCKIGKPELALGFYDNV 270
             LVH     G M   +++         +    N +C + VI G C   +   A   +D++
Sbjct: 716  TLVHGLCKGGQMSEALDICVSAKTNGMKL---NIICYNIVIKGLCLQSRLIQAFQLFDSL 772

Query: 269  EKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKG 90
            E+ G++  P  +TY  ++ +LC+EG +++  +L  +M  +G+  +   Y+S I GY   G
Sbjct: 773  ERLGLI--PTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGYIRIG 830

Query: 89   VLDEAFRKHREMLCKGIKPDTVSYTILI 6
             ++EAF+   E+      PD  S +  I
Sbjct: 831  QIEEAFKLLHELRTGAFNPDEFSVSSAI 858



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
 Frame = -2

Query: 566 ICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLE 387
           +C S+I G  + G+ PE A    +       + P+  T+  ++ +      +++V +++ 
Sbjct: 188 VCSSVISGFCNIGK-PELALKFFENAKTLGNLKPNLVTYTAVIGALCKLHRVNQVSDLVC 246

Query: 386 LMSGENFRYPF---------------------------------DNFVCSSVISGFCKIG 306
            M  EN  +                                   D   C+ +I G  K+G
Sbjct: 247 EMEKENLAFDVVFYSCWICGYIAEGMLLDAFKRNREMVQKGIRPDTISCTILIYGLSKLG 306

Query: 305 KPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVF 126
             E A G  + + KSG+    + VTYT I+   CK+G+++E   L   ++   + +D   
Sbjct: 307 NVEKAFGVLERMRKSGLEL--SSVTYTVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFM 364

Query: 125 YSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           Y++ I G   KG  D  F    EM  +G+K   V+Y  +I+
Sbjct: 365 YATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVIN 405



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 14/290 (4%)
 Frame = -2

Query: 899  VYTHFSKTLSTSAISYTSSQNLSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLL 720
            +   F  T  T   S    ++ S+ +   NLL  G      TL H L    K   ++  L
Sbjct: 676  IIVDFECTKFTLPTSEKMEESFSRFMRGNNLLL-GDVFDYSTLVHGLC---KGGQMSEAL 731

Query: 719  YLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGL 540
             +      N +K N   ++I+ + L   +R  +A      + + G  P +    +LI  L
Sbjct: 732  DICVSAKTNGMKLNIICYNIVIKGLCLQSRLIQAFQLFDSLERLGLIPTEITYGTLIDSL 791

Query: 539  ISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVL-ELMSGENFR 363
               G   E A  + ++ +  +G+ P+   +  L+  +   G ++   ++L EL +G    
Sbjct: 792  CREGYL-EDARQLFERMIP-KGLKPNTHIYNSLIDGYIRIGQIEEAFKLLHELRTGA--- 846

Query: 362  YPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKE 183
            +  D F  SS I  +C+ G  E AL F+   +  G+   P+ + +  ++  LC +GR++E
Sbjct: 847  FNPDEFSVSSAIKAYCQKGDMEGALSFFFEFKNEGI--SPDFLGFLYLIRGLCAKGRMEE 904

Query: 182  -------------VCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAF 72
                         V EL++K++ E   ++A    S +    E+G + EA+
Sbjct: 905  ARDILRETIQSQSVMELINKVDTE---IEAESIGSALTHLCEEGRILEAY 951


>ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1085

 Score =  299 bits (765), Expect = 7e-79
 Identities = 149/286 (52%), Positives = 204/286 (71%), Gaps = 2/286 (0%)
 Frame = -2

Query: 857 SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKG 681
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++ F Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 680 NSQTHSIITRTLVKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 504
           NS+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 503 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVIS 324
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  YPFDNFVCSSVIS
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNYPFDNFVCSSVIS 194

Query: 323 GFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGV 144
           GFC IGKPELAL F++N +  G L+ PN+VTYTA++ ALCK  RV +V +LV +ME E +
Sbjct: 195 GFCNIGKPELALKFFENAKTLGNLK-PNLVTYTAVIGALCKLHRVNQVSDLVCEMEKENL 253

Query: 143 VLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILI 6
             D VFYS WICGY  +G+L +AF+++REM+ KGI+PDT+S TILI
Sbjct: 254 AFDVVFYSCWICGYIAEGMLLDAFKRNREMVQKGIRPDTISCTILI 299



 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 66/261 (25%), Positives = 118/261 (45%)
 Frame = -2

Query: 788 PTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHF 609
           P L T    +  L K + +N +  L  +M   N+  +   +S      +      +A   
Sbjct: 220 PNLVTYTAVIGALCKLHRVNQVSDLVCEMEKENLAFDVVFYSCWICGYIAEGMLLDAFKR 279

Query: 608 MTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSF 429
             +M++ G  P    C  LI GL   G + E+AF VL++  K  G+  S  T+ +++  F
Sbjct: 280 NREMVQKGIRPDTISCTILIYGLSKLG-NVEKAFGVLERMRK-SGLELSSVTYTVIMLGF 337

Query: 428 SCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLR 249
              G ++    + E++ G       D F+ +++I G C+ G  +   G  D +E  G+  
Sbjct: 338 CKKGKLEEAFSLFEMVKG--LEMEVDEFMYATLIDGCCRKGDFDRVFGLLDEMETRGMKS 395

Query: 248 CPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFR 69
             ++VTY  +++ LCK GR  E   L     ++G+  D + YS+ + GY ++  +   F 
Sbjct: 396 --SIVTYNTVINGLCKWGRTSEADRL-----SKGLHGDVITYSTLLHGYIQEQNITGIFE 448

Query: 68  KHREMLCKGIKPDTVSYTILI 6
             R +   GI  D +   +LI
Sbjct: 449 TKRRLEDAGISLDVIMCNVLI 469



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
 Frame = -2

Query: 566 ICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLE 387
           +C S+I G  + G+ PE A    +       + P+  T+  ++ +      +++V +++ 
Sbjct: 188 VCSSVISGFCNIGK-PELALKFFENAKTLGNLKPNLVTYTAVIGALCKLHRVNQVSDLVC 246

Query: 386 LMSGENFRYPF---------------------------------DNFVCSSVISGFCKIG 306
            M  EN  +                                   D   C+ +I G  K+G
Sbjct: 247 EMEKENLAFDVVFYSCWICGYIAEGMLLDAFKRNREMVQKGIRPDTISCTILIYGLSKLG 306

Query: 305 KPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVF 126
             E A G  + + KSG+    + VTYT I+   CK+G+++E   L   ++   + +D   
Sbjct: 307 NVEKAFGVLERMRKSGLEL--SSVTYTVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFM 364

Query: 125 YSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           Y++ I G   KG  D  F    EM  +G+K   V+Y  +I+
Sbjct: 365 YATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVIN 405



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
 Frame = -2

Query: 458  FTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSS-VISGFCKIGKPELALGF 282
            F +  LVH     G M   +++         +    N +C + VI G C   +   A   
Sbjct: 736  FDYSTLVHGLCKGGQMSEALDICVSAKTNGMKL---NIICYNIVIKGLCLQSRLIQAFQL 792

Query: 281  YDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGY 102
            +D++E+ G++  P  +TY  ++ +LC+EG +++  +L  +M  +G+  +   Y+S I GY
Sbjct: 793  FDSLERLGLI--PTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGY 850

Query: 101  FEKGVLDEAFRKHREMLCKGIKPDTVSYTILI 6
               G ++EAF+   E+      PD  S +  I
Sbjct: 851  IRIGQIEEAFKLLHELRTGAFNPDEFSVSSAI 882



 Score = 60.1 bits (144), Expect = 7e-07
 Identities = 55/259 (21%), Positives = 107/259 (41%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  TLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQM 597
            T N  + FL K          +S+M    +    +T   + + L       E + ++++ 
Sbjct: 603  TCNDAIRFLCKRGFSEMASEFYSRMMRTRLLLEKKTFYFLIKAL-----NSEGKTWISRP 657

Query: 596  LKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYG 417
            +      + G+ D +++ +I   E  +      ++      M  S   F +    F    
Sbjct: 658  IFSNFLKEYGLFDPIVKQIIVDFECTKFTLPTSEK------MEESFSRFMVPNSMFKRLV 711

Query: 416  NMDRVIEVLEL-MSGENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPN 240
               R  +   L M   N     D F  S+++ G CK G+   AL    + + +G+    N
Sbjct: 712  KEKRFFDAYNLVMKRGNNLLLGDVFDYSTLVHGLCKGGQMSEALDICVSAKTNGMKL--N 769

Query: 239  VVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHR 60
            ++ Y  ++  LC + R+ +  +L   +E  G++   + Y + I     +G L++A +   
Sbjct: 770  IICYNIVIKGLCLQSRLIQAFQLFDSLERLGLIPTEITYGTLIDSLCREGYLEDARQLFE 829

Query: 59   EMLCKGIKPDTVSYTILID 3
             M+ KG+KP+T  Y  LID
Sbjct: 830  RMIPKGLKPNTHIYNSLID 848


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  290 bits (743), Expect = 2e-76
 Identities = 155/276 (56%), Positives = 192/276 (69%)
 Frame = -2

Query: 830 KTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITR 651
           +TLSLQ  LK GFTPT K +N FL FL +    N + + FSQ+ +NN   N +T S++T 
Sbjct: 6   RTLSLQTSLKRGFTPTPKPINCFLLFLFRHRKFNLITHFFSQLKSNNAPTNRRTLSLLTW 65

Query: 650 TLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGM 471
           +L+K++++EEAE FM       H     + DSLIQGL      PE+A SVLQ+C++ RG+
Sbjct: 66  SLLKSHKFEEAEQFMHSHT---HITHSSMWDSLIQGL----HDPEKALSVLQRCVRDRGV 118

Query: 470 SPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPELA 291
            PS  TFC++VH  S  G M R IEVLELM+G+  RYPFD+FVCSSVISGFC+IGKPELA
Sbjct: 119 LPSSSTFCLVVHKLSSKGLMGRAIEVLELMAGDGVRYPFDDFVCSSVISGFCRIGKPELA 178

Query: 290 LGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWI 111
           LGF+ NV   G LR PNVVT TA+V ALCK GRV EVC LV  ME EG+ LD V YS+W 
Sbjct: 179 LGFFKNVTDCGGLR-PNVVTCTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWA 237

Query: 110 CGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           CGY E+ VL E F + REM+ KGI  D VSYT+L+D
Sbjct: 238 CGYVEERVLGEVFGRMREMVEKGIGHDFVSYTVLVD 273



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 47/223 (21%), Positives = 102/223 (45%)
 Frame = -2

Query: 671 THSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQ 492
           +++++     K    E++  F+ +M+K+GH P K    +++      G+  E AF V + 
Sbjct: 267 SYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKV-EEAFGVFES 325

Query: 491 CLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCK 312
            +K  G+    + F +L+  F   G+ D+V  + + M           +  ++V++G  K
Sbjct: 326 -MKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAY--NAVMNGLSK 382

Query: 311 IGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDA 132
            G+   A     NV         +V+TY+ ++    +E  +  + +   ++E  G+ +D 
Sbjct: 383 HGRTSEADELLKNV-------AADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDV 435

Query: 131 VFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           V  +  I   F  G  ++ +  ++ M    + P++V+Y  +ID
Sbjct: 436 VMCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMID 478



 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 37/110 (33%), Positives = 55/110 (50%)
 Frame = -2

Query: 332  VISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMEN 153
            VI G CK G    AL     VEK G+    N+V Y +I++ LC EGR+ E   L+  +E 
Sbjct: 716  VIDGLCKGGYLNKALDLCAFVEKKGMNL--NIVIYNSIINGLCHEGRLIEAFRLLDSIEK 773

Query: 152  EGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
              +V   + Y++ I     +G L +A     +M+ KG +P    Y  L+D
Sbjct: 774  LNLVPSEITYATVIYALCREGFLLDAEHVFSKMVLKGFQPKVQVYNSLLD 823



 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 33/114 (28%), Positives = 64/114 (56%)
 Frame = -2

Query: 344  VCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVH 165
            + +S+I+G C  G+   A    D++EK  ++  P+ +TY  ++ ALC+EG + +   +  
Sbjct: 747  IYNSIINGLCHEGRLIEAFRLLDSIEKLNLV--PSEITYATVIYALCREGFLLDAEHVFS 804

Query: 164  KMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
            KM  +G       Y+S + G  + G L++AF    +M  K I+PD+++ + +I+
Sbjct: 805  KMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISAVIN 858


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  268 bits (684), Expect = 2e-69
 Identities = 137/278 (49%), Positives = 188/278 (67%), Gaps = 1/278 (0%)
 Frame = -2

Query: 833 SKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIIT 654
           S   SLQ+LLKSGF+PTL +++ FL +L +    N +L  +SQ+++  I  N + +SI++
Sbjct: 9   SGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVS 68

Query: 653 RTLVKANRYEEAEHFMT-QMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFR 477
              +  NRYE+AE F+   + K   FP+  + DSLI G     + P +   +L+ CL+  
Sbjct: 69  WAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNH 128

Query: 476 GMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPE 297
           G  PS  TFC L++ F   G MD  IEVLE+M+ +N  YPFDNFVCS+VISGFCKIGKPE
Sbjct: 129 GAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPE 188

Query: 296 LALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSS 117
           LALGF+++   SGVL  PN+VTYT +VSALC+ G+V EV +LV ++E+EG   D VFYS+
Sbjct: 189 LALGFFESAVDSGVL-VPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSN 247

Query: 116 WICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILID 3
           WI GYF+ G L +A  + REM+ KG+  D VSY+ILID
Sbjct: 248 WIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILID 285



 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 34/255 (13%)
 Frame = -2

Query: 665 SIITRTLVKANRYEEAEHFMTQMLKDGHFP-QKGICDSLIQGLISPGESPERAFSVLQQC 489
           S+I R + K       E       K+ ++P    +C ++I G    G+ PE A    +  
Sbjct: 139 SLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGK-PELALGFFESA 197

Query: 488 LKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYP---FDNFV-------- 342
           +    + P+  T+  LV +    G +D V +++  +  E F +    + N++        
Sbjct: 198 VDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGA 257

Query: 341 ----------------------CSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTY 228
                                  S +I G  K G  E ALG    + K GV   PN++TY
Sbjct: 258 LVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVE--PNLITY 315

Query: 227 TAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLC 48
           TAI+  LCK G+++E   L +++ + G+ +D   Y + I G   KG L+ AF    +M  
Sbjct: 316 TAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQ 375

Query: 47  KGIKPDTVSYTILID 3
           +GI+P  ++Y  +I+
Sbjct: 376 RGIQPSILTYNTVIN 390



 Score = 70.1 bits (170), Expect = 7e-10
 Identities = 66/290 (22%), Positives = 123/290 (42%), Gaps = 28/290 (9%)
 Frame = -2

Query: 815  QNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITRTLVKA 636
            + +++ G    + + +  +  LSK  ++   L L  +M    ++ N  T++ I R L K 
Sbjct: 266  REMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKM 325

Query: 635  NRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSPSRF 456
             + EEA     ++L  G    + +  +LI G+   G    RAFS+L   ++ RG+ PS  
Sbjct: 326  GKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNL-NRAFSMLGD-MEQRGIQPSIL 383

Query: 455  TFCMLVHSFSCYGNMDRVIEVLELMSGENFRY---------------------------- 360
            T+  +++     G +    EV + + G+   Y                            
Sbjct: 384  TYNTVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKI 443

Query: 359  PFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEV 180
            P D  +C+ ++  F  +G    A   Y  + +  +   P+  TY  ++   CK G+++E 
Sbjct: 444  PMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLT--PDTATYATMIKGYCKTGQIEEA 501

Query: 179  CELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPD 30
             E+ +++    V   AV Y+  I    +KG+LD A     E+  KG+  D
Sbjct: 502  LEMFNELRKSSVSA-AVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 550



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 47/183 (25%), Positives = 83/183 (45%)
 Frame = -2

Query: 554 LIQGLISPGESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSG 375
           LI GL   G + E A  +L + +K  G+ P+  T+  ++      G ++    +   +  
Sbjct: 283 LIDGLSKEG-NVEEALGLLGKMIK-EGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILS 340

Query: 374 ENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEG 195
                  D F+  ++I G C+ G    A     ++E+ G+   P+++TY  +++ LC  G
Sbjct: 341 VGIEV--DEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQ--PSILTYNTVINGLCMAG 396

Query: 194 RVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYT 15
           RV E  E+     ++GVV D + YS+ +  Y +   +D      R  L   I  D V   
Sbjct: 397 RVSEADEV-----SKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCN 451

Query: 14  ILI 6
           IL+
Sbjct: 452 ILL 454



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 55/222 (24%), Positives = 98/222 (44%)
 Frame = -2

Query: 671 THSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQ 492
           ++SI+   L K    EEA   + +M+K+G  P      ++I+GL   G+  E AF +  +
Sbjct: 279 SYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKL-EEAFVLFNR 337

Query: 491 CLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCK 312
            L   G+    F +  L+      GN++R   +L  M     +     +  ++VI+G C 
Sbjct: 338 ILSV-GIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTY--NTVINGLCM 394

Query: 311 IGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDA 132
            G+   A    D V K  V    +V+TY+ ++ +  K   +  V E+  +     + +D 
Sbjct: 395 AGRVSEA----DEVSKGVV---GDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDL 447

Query: 131 VFYSSWICGYFEKGVLDEAFRKHREMLCKGIKPDTVSYTILI 6
           V  +  +  +   G   EA   +R M    + PDT +Y  +I
Sbjct: 448 VMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMI 489



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
 Frame = -2

Query: 419  GNMDRVIEVLELMSGENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSG--VLRC 246
            G+ +  IEV  +M  +     F + +  +++           +L  Y  V  +G   L  
Sbjct: 600  GSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNL-------RSLDAYLLVVNAGETTLSS 652

Query: 245  PNVVTYTAIVSALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRK 66
             +V+ YT I++ LCKEG + +   L    ++ GV L+ + Y+S I G  ++G L EA R 
Sbjct: 653  MDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRL 712

Query: 65   HREMLCKGIKPDTVSYTILID 3
               +   G+ P  V+Y ILID
Sbjct: 713  FDSLENIGLVPSEVTYGILID 733



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 36/131 (27%), Positives = 64/131 (48%)
 Frame = -2

Query: 395  VLELMSGENFRYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIV 216
            +L + +GE      D    + +I+G CK G    AL      +  GV    N +TY +++
Sbjct: 640  LLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTL--NTITYNSLI 697

Query: 215  SALCKEGRVKEVCELVHKMENEGVVLDAVFYSSWICGYFEKGVLDEAFRKHREMLCKGIK 36
            + LC++G + E   L   +EN G+V   V Y   I    ++G+  +A +    M+ KG+ 
Sbjct: 698  NGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLV 757

Query: 35   PDTVSYTILID 3
            P+ + Y  ++D
Sbjct: 758  PNIIIYNSIVD 768