BLASTX nr result
ID: Coptis25_contig00027026
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00027026 (365 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat... 135 4e-30 ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat... 129 2e-28 ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat... 120 9e-26 ref|NP_001031987.1| pentatricopeptide repeat-containing protein ... 105 4e-21 ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab... 103 1e-20 >ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Vitis vinifera] Length = 615 Score = 135 bits (339), Expect = 4e-30 Identities = 65/118 (55%), Positives = 92/118 (77%), Gaps = 1/118 (0%) Frame = +3 Query: 15 HPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNKVLY 194 HPTI++++ C TL+++KQIH QL+ING ND QL+ QF++++AL +PN+L YSN+VL Sbjct: 10 HPTISMVEPCTTLRELKQIHTQLLINGLLND--PQLVGQFVASIALNNPNNLHYSNQVLD 67 Query: 195 HFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCTHIL 365 + + PT+FT NSMIRAHSKS+TP++SF+ + RIL + L DNYTFTFL+RT +L Sbjct: 68 NSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLL 125 >ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Glycine max] Length = 616 Score = 129 bits (324), Expect = 2e-28 Identities = 64/121 (52%), Positives = 89/121 (73%), Gaps = 2/121 (1%) Frame = +3 Query: 6 IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185 I HPTI+LL +C TLK++KQIH QL++ G N+ + QF++T+AL + +LDY+NK Sbjct: 7 IAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFH--GQFVATIALHNTTNLDYANK 64 Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRT--DNLFVDNYTFTFLIRTCTH 359 +L H PT+FTLNSMIRA+SKS+TP +SF+ + IL + +NL DNYTFTFL+RTC Sbjct: 65 LLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQ 124 Query: 360 I 362 + Sbjct: 125 L 125 >ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Cucumis sativus] Length = 614 Score = 120 bits (302), Expect = 9e-26 Identities = 59/117 (50%), Positives = 88/117 (75%), Gaps = 1/117 (0%) Frame = +3 Query: 6 IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185 I HPTI L+ + TLK++KQIH QL+ING N+ +L+ QF++++A+++P +L YSN+ Sbjct: 7 IAKHPTIALIDSFITLKELKQIHTQLVINGLLNNR--ELLGQFVASIAVRNPTNLLYSNQ 64 Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRT-DNLFVDNYTFTFLIRTC 353 +L PT+F LNSMIRA+SKS TP++SF +++IL++ D + DNYTF FL+RTC Sbjct: 65 ILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC 121 >ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g40405 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 612 Score = 105 bits (262), Expect = 4e-21 Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Frame = +3 Query: 6 IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185 IG HP I LL + T K+++QIH +L ++G D + L+ F+ VAL +LDY+N+ Sbjct: 4 IGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDH--LVGHFVKAVALSDHKYLDYANQ 61 Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCT 356 +L E PT+F LNSMIRAH KS P +SF + RIL + N L DNYT FL++ CT Sbjct: 62 ILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT 119 >ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata] Length = 1111 Score = 103 bits (258), Expect = 1e-20 Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 1/115 (0%) Frame = +3 Query: 15 HPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNKVLY 194 HP I+LL + T K+I+QIH +L ++G D + L+ QF+ VAL +LDY+N++L Sbjct: 15 HPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDH--LVGQFVKAVALSDHTYLDYANQILD 72 Query: 195 HFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCT 356 + PT+F LNSMIRAH KS P +SF + RIL + N L DNYT FL++ CT Sbjct: 73 RSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT 127