BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027026
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat...   135   4e-30
ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat...   129   2e-28
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...   120   9e-26
ref|NP_001031987.1| pentatricopeptide repeat-containing protein ...   105   4e-21
ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab...   103   1e-20

>ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  135 bits (339), Expect = 4e-30
 Identities = 65/118 (55%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
 Frame = +3

Query: 15  HPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNKVLY 194
           HPTI++++ C TL+++KQIH QL+ING  ND   QL+ QF++++AL +PN+L YSN+VL 
Sbjct: 10  HPTISMVEPCTTLRELKQIHTQLLINGLLND--PQLVGQFVASIALNNPNNLHYSNQVLD 67

Query: 195 HFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCTHIL 365
           + + PT+FT NSMIRAHSKS+TP++SF+ + RIL +   L  DNYTFTFL+RT   +L
Sbjct: 68  NSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLL 125


>ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  129 bits (324), Expect = 2e-28
 Identities = 64/121 (52%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
 Frame = +3

Query: 6   IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185
           I  HPTI+LL +C TLK++KQIH QL++ G  N+ +     QF++T+AL +  +LDY+NK
Sbjct: 7   IAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFH--GQFVATIALHNTTNLDYANK 64

Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRT--DNLFVDNYTFTFLIRTCTH 359
           +L H   PT+FTLNSMIRA+SKS+TP +SF+ +  IL +  +NL  DNYTFTFL+RTC  
Sbjct: 65  LLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQ 124

Query: 360 I 362
           +
Sbjct: 125 L 125


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  120 bits (302), Expect = 9e-26
 Identities = 59/117 (50%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
 Frame = +3

Query: 6   IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185
           I  HPTI L+ +  TLK++KQIH QL+ING  N+   +L+ QF++++A+++P +L YSN+
Sbjct: 7   IAKHPTIALIDSFITLKELKQIHTQLVINGLLNNR--ELLGQFVASIAVRNPTNLLYSNQ 64

Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRT-DNLFVDNYTFTFLIRTC 353
           +L     PT+F LNSMIRA+SKS TP++SF  +++IL++ D +  DNYTF FL+RTC
Sbjct: 65  ILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC 121


>ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g40405 gi|10178152|dbj|BAB11597.1|
           selenium-binding protein-like [Arabidopsis thaliana]
           gi|332007161|gb|AED94544.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  105 bits (262), Expect = 4e-21
 Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
 Frame = +3

Query: 6   IGMHPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNK 185
           IG HP I LL +  T K+++QIH +L ++G   D +  L+  F+  VAL    +LDY+N+
Sbjct: 4   IGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDH--LVGHFVKAVALSDHKYLDYANQ 61

Query: 186 VLYHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCT 356
           +L   E PT+F LNSMIRAH KS  P +SF  + RIL + N L  DNYT  FL++ CT
Sbjct: 62  ILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT 119


>ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein
           ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata]
          Length = 1111

 Score =  103 bits (258), Expect = 1e-20
 Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
 Frame = +3

Query: 15  HPTITLLQTCKTLKQIKQIHNQLIINGHYNDHYAQLINQFISTVALKHPNHLDYSNKVLY 194
           HP I+LL +  T K+I+QIH +L ++G   D +  L+ QF+  VAL    +LDY+N++L 
Sbjct: 15  HPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDH--LVGQFVKAVALSDHTYLDYANQILD 72

Query: 195 HFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LFVDNYTFTFLIRTCT 356
             + PT+F LNSMIRAH KS  P +SF  + RIL + N L  DNYT  FL++ CT
Sbjct: 73  RSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT 127