BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026944
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...    65   9e-09
emb|CBI29931.3| unnamed protein product [Vitis vinifera]               65   9e-09
ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|XP_003619016.1| Pentatricopeptide repeat-containing protein ...    60   2e-07
ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containi...    59   7e-07

>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score = 64.7 bits (156), Expect = 9e-09
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = +1

Query: 169 SESGGISLGQSIFEKLSSRNNISWVAMISGLSQNGHEKEALNLFCEMQKSGI 324
           S++G + L + +FE+L  ++++SWVAMISGLSQNG E EA+ LFC+M KS +
Sbjct: 158 SKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 64.7 bits (156), Expect = 9e-09
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = +1

Query: 169 SESGGISLGQSIFEKLSSRNNISWVAMISGLSQNGHEKEALNLFCEMQKSGI 324
           S++G + L + +FE+L  ++++SWVAMISGLSQNG E EA+ LFC+M KS +
Sbjct: 158 SKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209


>ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1|
           predicted protein [Populus trichocarpa]
          Length = 989

 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 26/52 (50%), Positives = 42/52 (80%)
 Frame = +1

Query: 169 SESGGISLGQSIFEKLSSRNNISWVAMISGLSQNGHEKEALNLFCEMQKSGI 324
           +++G I   + +F+ L +++++SWVAMISG SQNG+E+EA++LFCEM  +GI
Sbjct: 158 AKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209


>ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494031|gb|AES75234.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 999

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 25/46 (54%), Positives = 39/46 (84%)
 Frame = +1

Query: 172 ESGGISLGQSIFEKLSSRNNISWVAMISGLSQNGHEKEALNLFCEM 309
           ++G +S  + +FE L +R+++SWVAMISGLSQNG+E+EA+ LFC++
Sbjct: 211 KNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI 256


>ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score = 58.5 bits (140), Expect = 7e-07
 Identities = 25/52 (48%), Positives = 36/52 (69%)
 Frame = +1

Query: 169 SESGGISLGQSIFEKLSSRNNISWVAMISGLSQNGHEKEALNLFCEMQKSGI 324
           S  G +     +F+K++ +N +SW AMISGLS NGH +EA+  F EMQK+G+
Sbjct: 276 SRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGV 327